Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth D]SCOP2B SuperfamilyPilZ domain-like8034997 3000480 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyPilZ domain-like8034997 3000480 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF03705e5y4rA2 A: alpha arraysX: Chemotaxis receptor methyltransferase CheR, N-terminal domain (From Topology)H: Chemotaxis receptor methyltransferase CheR, N-terminal domain (From Topology)T: Chemotaxis receptor methyltransferase CheR, N-terminal domainF: PF03705ECOD (1.6)
APF01739e5y4rA1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01739ECOD (1.6)
C [auth B]PF03705e5y4rB2 A: alpha arraysX: Chemotaxis receptor methyltransferase CheR, N-terminal domain (From Topology)H: Chemotaxis receptor methyltransferase CheR, N-terminal domain (From Topology)T: Chemotaxis receptor methyltransferase CheR, N-terminal domainF: PF03705ECOD (1.6)
C [auth B]PF01739e5y4rB1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: PF01739ECOD (1.6)
B [auth D]PF07238e5y4rD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF07238ECOD (1.6)
D [auth C]PF07238e5y4rC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF07238ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth D]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)
D [auth C]2.40.10.220 Mainly Beta Beta Barrel Thrombin, subunit H predicted glycosyltransferase like domainsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth B]
PF03705CheR methyltransferase, all-alpha domain (CheR_N)CheR methyltransferase, all-alpha domainCheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase.Domain
A,
C [auth B]
PF01739CheR methyltransferase, SAM binding domain (CheR)CheR methyltransferase, SAM binding domainCheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SA ...CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Domain
B [auth D],
D [auth C]
PF07238PilZ domain (PilZ)PilZ domainPilZ is a c-di-GMP binding domain [3] found in widespread cytoplasmic receptors, which is involved in regulation of motility, biofilm formation and virulence of many bacterial pathogens. This domain binds c-di-GMP through RXXXR and [D/N]hSXXG motifs, ...PilZ is a c-di-GMP binding domain [3] found in widespread cytoplasmic receptors, which is involved in regulation of motility, biofilm formation and virulence of many bacterial pathogens. This domain binds c-di-GMP through RXXXR and [D/N]hSXXG motifs, however, some PilZ domains lack these motifs and do not bind c-di-GMP [6]. Proteins which contain PilZ are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias [5]. This is the canonical PilZ domain whose structure consists of six beta-strands that form a beta barrel, followed by a long C-terminal alpha-helix [6].
Domain