5XU1
Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | ABC transporter ATPase domain-like | 8061063 | 4003976 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | ABC transporter-like P-loop ATPases | 8061064 | 3002020 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | ABC transporter-like P-loop ATPases | 8061064 | 3002020 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | ABC_tran | e5xu1A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
B | ABC_tran | e5xu1B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ABC_tran | ECOD (1.6) |
C [auth M] | MacB_PCD | e5xu1M2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: MacB_PCD | ECOD (1.6) |
C [auth M] | UNK_F_TYPE | e5xu1M3 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: MacB transmembrane domain | F: UNK_F_TYPE | ECOD (1.6) |
C [auth M] | UNK_F_TYPE | e5xu1M1 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in periplasmic region of MacB (From Topology) | T: ferredoxin-like domain in periplasmic region of MacB | F: UNK_F_TYPE | ECOD (1.6) |
D [auth S] | MacB_PCD | e5xu1S2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: MacB_PCD | ECOD (1.6) |
D [auth S] | UNK_F_TYPE | e5xu1S3 | A: alpha bundles | X: Type II ABC exporter transmembrane domain fold | H: Type II ABC exporter transmembrane domain-related | T: MacB transmembrane domain | F: UNK_F_TYPE | ECOD (1.6) |
D [auth S] | UNK_F_TYPE | e5xu1S1 | A: a+b two layers | X: Alpha-beta plaits | H: ferredoxin-like domain in periplasmic region of MacB (From Topology) | T: ferredoxin-like domain in periplasmic region of MacB | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00005 | ABC transporter (ABC_tran) | ABC transporter | ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are comp ... | Domain | |
C [auth M], D [auth S] | PF12704 | MacB-like periplasmic core domain (MacB_PCD) | MacB-like periplasmic core domain | - | Family |
C [auth M], D [auth S] | PF02687 | FtsX-like permease family (FtsX) | FtsX-like permease family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR003593 | AAA+ ATPase domain | Domain | |
IPR017871 | ABC transporter-like, conserved site | Conserved Site | |
IPR017911 | MacB-like, ATP-binding domain | Domain | |
IPR003439 | ABC transporter-like, ATP-binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
C [auth M], D [auth S] | IPR003838 | ABC3 transporter permease protein domain | Domain |
C [auth M], D [auth S] | IPR025857 | MacB-like periplasmic core domain | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | ABC transporters | FtsX-like permease |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Chains | External Link | Comment |
---|---|---|
MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | ATP Binding Cassette (ABC) Transporters | MacAB-like efflux pump, Spr0694-0695 section |