5X8P

Structure of the 70S chloroplast ribosome from spinach


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth 2]SCOP2B SuperfamilyZn-binding ribosomal proteins8075064 3001320 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyTranslational proteins8089154 3000811 SCOP2B (2022-06-29)
V [auth R]SCOP2B SuperfamilyRibosomal protein L208075018 3000563 SCOP2B (2022-06-29)
W [auth S]SCOP2B Superfamilyl21p-like8082449 3002005 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRibosomal protein L48080708 3001146 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyRL5-like8073876 3001709 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyL9 N-domain-like8070581 3000338 SCOP2B (2022-06-29)
O [auth K]SCOP2B SuperfamilyRibosomal protein L138066065 3001134 SCOP2B (2022-06-29)
P [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like8072036 3000433 SCOP2B (2022-06-29)
Q [auth M]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070567 3001045 SCOP2B (2022-06-29)
R [auth N]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076047 3000884 SCOP2B (2022-06-29)
S [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089018 3000995 SCOP2B (2022-06-29)
T [auth P]SCOP2B SuperfamilyTranslational machinery components8074012 3000571 SCOP2B (2022-06-29)
U [auth Q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8089130 3000334 SCOP2B (2022-06-29)
Y [auth U]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077091 3000210 SCOP2B (2022-06-29)
Z [auth V]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082517 3000334 SCOP2B (2022-06-29)
CA [auth Y]SCOP2B SuperfamilyL28p-like8089408 3001966 SCOP2B (2022-06-29)
GA [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8098310 3001397 SCOP2B (2022-06-29)
KA [auth g]SCOP2B SuperfamilyRibosomal protein S78077983 3000799 SCOP2B (2022-06-29)
LA [auth h]SCOP2B SuperfamilyRibosomal protein S88079063 3000709 SCOP2B (2022-06-29)
MA [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082673 3000100 SCOP2B (2022-06-29)
D [auth 4]SCOP2B SuperfamilyL35p-like8083340 3000790 SCOP2B (2022-06-29)
NA [auth j]SCOP2B SuperfamilyRibosomal protein S108098942 3001336 SCOP2B (2022-06-29)
OA [auth k]SCOP2B SuperfamilyTranslational machinery components8098296 3000571 SCOP2B (2022-06-29)
PA [auth l]SCOP2 FamilyCold shock DNA-binding domain-like8098841 4001909 SCOP2 (2022-06-29)
PA [auth l]SCOP2 SuperfamilyNucleic acid-binding proteins8098842 3000135 SCOP2 (2022-06-29)
QA [auth m]SCOP2B SuperfamilyS13-like H2TH domain8098944 3000053 SCOP2B (2022-06-29)
SA [auth p]SCOP2B SuperfamilyRibosomal protein S168066569 3000680 SCOP2B (2022-06-29)
TA [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins8059282 3000135 SCOP2B (2022-06-29)
VA [auth s]SCOP2B SuperfamilyRibosomal protein S198086060 3000686 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyRibosomal protein L368083320 3001346 SCOP2B (2022-06-29)
YA [auth y]SCOP2B SuperfamilyYfiA/CsgE-like8076007 3000912 SCOP2B (2022-06-29)
BB [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif8083404 3001473 SCOP2B (2022-06-29)
DB [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052598 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth 2]PF00471e5x8p21 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
J [auth D]PF00297e5x8pD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
V [auth R]PF00453e5x8pR1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
W [auth S]PF00829e5x8pS1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
XA [auth u]PF01165e5x8pu1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: PF01165ECOD (1.6)
AB [auth w]PF04839e5x8pw1 A: a+b two layersX: Probable 30S ribosomal protein PSRP-3 (From Topology)H: Probable 30S ribosomal protein PSRP-3 (From Topology)T: Probable 30S ribosomal protein PSRP-3F: PF04839ECOD (1.6)
A [auth 1]F_UNCLASSIFIEDe5x8p11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: F_UNCLASSIFIEDECOD (1.6)
K [auth E]PF00573e5x8pE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
L [auth F]PF00281,PF00673e5x8pF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
M [auth G]PF00347e5x8pG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
N [auth H]PF01281e5x8pH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
O [auth K]PF00572e5x8pK1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
P [auth L]PF00238e5x8pL1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Q [auth M]PF00828e5x8pM1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
R [auth N]PF00252e5x8pN1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
S [auth O]PF01196e5x8pO1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
T [auth P]PF00861e5x8pP1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
U [auth Q]PF01245e5x8pQ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
X [auth T]PF00237e5x8pT1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
Y [auth U]PF00276e5x8pU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
Z [auth V]PF00467,PF17136e5x8pV1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
BA [auth X]PF01016e5x8pX1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
CA [auth Y]PF00830e5x8pY1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: PF00830ECOD (1.6)
C [auth 3]PF00468e5x8p31 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
DA [auth Z]PF00831e5x8pZ1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
FA [auth 0]PF01197e5x8p01 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
GA [auth b]PF00318e5x8pb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
HA [auth c]PF00189e5x8pc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
HA [auth c]F_UNCLASSIFIEDe5x8pc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: F_UNCLASSIFIEDECOD (1.6)
IA [auth e]PF03719e5x8pe2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
IA [auth e]PF00333e5x8pe1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
JA [auth f]PF01250e5x8pf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: PF01250ECOD (1.6)
KA [auth g]PF00177e5x8pg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
LA [auth h]PF00410e5x8ph1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
LA [auth h]PF00410e5x8ph2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
MA [auth i]PF00380e5x8pi1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
D [auth 4]PF01632e5x8p41 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
NA [auth j]PF00338e5x8pj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
OA [auth k]PF00411e5x8pk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
PA [auth l]PF00164e5x8pl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
QA [auth m]PF00416e5x8pm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
RA [auth o]PF00312e5x8po1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
SA [auth p]PF00886e5x8pp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: PF00886ECOD (1.6)
TA [auth q]PF00366e5x8pq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366ECOD (1.6)
UA [auth r]PF01084e5x8pr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: PF01084ECOD (1.6)
VA [auth s]PF00203e5x8ps1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
WA [auth t]PF01649e5x8pt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: PF01649ECOD (1.6)
E [auth 5]PF00444e5x8p51 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
YA [auth y]PF02482e5x8py1 A: a+b two layersX: dsRBD-likeH: Ribosome binding protein Y (YfiA homologue) (From Topology)T: Ribosome binding protein Y (YfiA homologue)F: PF02482ECOD (1.6)
BB [auth d]PF00163,PF01479e5x8pd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
CB [auth v]PF00076e5x8pv2 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: PF00076ECOD (1.6)
DB [auth n]PF00253e5x8pn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
I [auth C]PF00181e5x8pC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
I [auth C]PF03947e5x8pC1 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 2]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
J [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
V [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
W [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
XA [auth u]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
AB [auth w]PF04839Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) (PSRP-3_Ycf65)Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)- Family
K [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
L [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
L [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
M [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
N [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
O [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
P [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
Q [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
R [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
S [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
T [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
U [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
X [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Y [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Z [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
Z [auth V]PF00467KOW motif (KOW)KOW motif- Family
BA [auth X]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
CA [auth Y]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
C [auth 3]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DA [auth Z]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FA [auth 0]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
GA [auth b]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
HA [auth c]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
IA [auth e]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
IA [auth e]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
JA [auth f]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
KA [auth g]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
LA [auth h]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
MA [auth i]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
D [auth 4]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
NA [auth j]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
OA [auth k]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PA [auth l]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
QA [auth m]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
RA [auth o]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
SA [auth p]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
TA [auth q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
UA [auth r]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
VA [auth s]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
E [auth 5]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
YA [auth y]PF02482Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE)Sigma 54 modulation protein / S30EA ribosomal protein- Family
BB [auth d]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
BB [auth d]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
CB [auth v]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
DB [auth n]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
EB [auth x]PF17067Ribosomal protein S31e (RPS31)Ribosomal protein S31e- Family
FB [auth 8]PF00575S1 RNA binding domain (S1)S1 RNA binding domainThe S1 domain occurs in a wide range of RNA associated proteins. It is structurally similar to cold shock protein which binds nucleic acids. The S1 domain has an OB-fold structure.Domain
G [auth 7]PF17257Family of unknown function (DUF5323) (DUF5323)Family of unknown function (DUF5323)- Family
I [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
I [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 2]50S ribosomal protein L33, chloroplastic
J [auth D]protein L3
V [auth R]50S ribosomal protein L20, chloroplastic
W [auth S]50S ribosomal protein L21, chloroplastic
XA [auth u]protein S21
AB [auth w]protein cS23
A [auth 1]50S ribosomal protein L32, chloroplastic
K [auth E]50S ribosomal protein L4, chloroplastic
L [auth F]50S ribosomal protein L5, chloroplastic
M [auth G]protein L6
N [auth H]protein L9
O [auth K]50S ribosomal protein L13, chloroplastic
P [auth L]50S ribosomal protein L14, chloroplastic
Q [auth M]protein L15
R [auth N]50S ribosomal protein L16, chloroplastic
S [auth O]protein L17
T [auth P]protein L18
U [auth Q]50S ribosomal protein L19, chloroplastic
X [auth T]50S ribosomal protein L22, chloroplastic
Y [auth U]50S ribosomal protein L23, chloroplastic
Z [auth V]50S ribosomal protein L24, chloroplastic
AA [auth W]4.8S rRNA---
BA [auth X]protein L27
CA [auth Y]protein L28
C [auth 3]50S ribosomal protein L34, chloroplastic
DA [auth Z]protein L29
EA [auth A]23S rRNA---
FA [auth 0]50S ribosomal protein L31
GA [auth b]30S ribosomal protein S2, chloroplastic
HA [auth c]30S ribosomal protein S3, chloroplastic
IA [auth e]30S ribosomal protein S5, chloroplastic
JA [auth f]30S ribosomal protein S6 alpha, chloroplastic
KA [auth g]30S ribosomal protein S7, chloroplastic
LA [auth h]30S ribosomal protein S8, chloroplastic
MA [auth i]30S ribosomal protein S9, chloroplastic
D [auth 4]50S ribosomal protein L35, chloroplastic
NA [auth j]protein S10
OA [auth k]30S ribosomal protein S11, chloroplastic
PA [auth l]30S ribosomal protein S12, chloroplastic
QA [auth m]30S ribosomal protein S13, chloroplastic
RA [auth o]30S ribosomal protein S15, chloroplastic
SA [auth p]30S ribosomal protein S16, chloroplastic
TA [auth q]protein S17
UA [auth r]30S ribosomal protein S18, chloroplastic
VA [auth s]30S ribosomal protein S19 alpha, chloroplastic
WA [auth t]protein S20---
E [auth 5]50S ribosomal protein L36, chloroplastic
YA [auth y]protein plastid pY
ZA [auth a]16S rRNA---
BB [auth d]30S ribosomal protein S4, chloroplastic
CB [auth v]protein cS22 -
DB [auth n]30S ribosomal protein S14, chloroplastic
EB [auth x]protein bTHXc
FB [auth 8]30S ribosomal protein S1, chloroplastic
F [auth 6]protein cL37
G [auth 7]protein cL38
H [auth B]5S rRNA---
I [auth C]50S ribosomal protein L2, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 2]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 2]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 2]IPR001705Large ribosomal subunit protein bL33Family
B [auth 2]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
J [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
J [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
J [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
J [auth D]IPR000597Large ribosomal subunit protein uL3Family
V [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
V [auth R]IPR005813Large ribosomal subunit protein bL20Family
W [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
W [auth S]IPR001787Large ribosomal subunit protein bL21Family
W [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
W [auth S]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
XA [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
XA [auth u]IPR001911Small ribosomal subunit protein bS21Family
AB [auth w]IPR038447PSRP-3/Ycf65 superfamilyHomologous Superfamily
AB [auth w]IPR006924Ribosomal protein PSRP-3/Ycf65Family
A [auth 1]IPR002677Large ribosomal subunit protein bL32Family
A [auth 1]IPR044958Large ribosomal subunit protein bL32, plant/cyanobacteria typeFamily
A [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
K [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
K [auth E]IPR002136Large ribosomal subunit protein uL4Family
K [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
L [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
L [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
L [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
L [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
L [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
L [auth F]IPR002132Large ribosomal subunit protein uL5Family
M [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
M [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
M [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
M [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
M [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
N [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
N [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
N [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
N [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
N [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
N [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
N [auth H]IPR000244Large ribosomal subunit protein bL9Family
O [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
O [auth K]IPR005822Large ribosomal subunit protein uL13Family
O [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
O [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
P [auth L]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
P [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth L]IPR000218Large ribosomal subunit protein uL14Family
P [auth L]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Q [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
Q [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Q [auth M]IPR030878Large ribosomal subunit protein uL15Family
Q [auth M]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
Q [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
R [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
R [auth N]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
R [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
R [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
R [auth N]IPR047873Large ribosomal subunit protein uL16Family
S [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
S [auth O]IPR000456Large ribosomal subunit protein bL17Family
T [auth P]IPR005484Large ribosomal subunit protein uL18Family
T [auth P]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
U [auth Q]IPR001857Large ribosomal subunit protein bL19Family
U [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
U [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
X [auth T]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
X [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
X [auth T]IPR001063Large ribosomal subunit protein uL22Family
X [auth T]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
Y [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Y [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Y [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth V]IPR003256Large ribosomal subunit protein uL24Family
Z [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Z [auth V]IPR005824KOWDomain
Z [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth X]IPR001684Large ribosomal subunit protein bL27Family
BA [auth X]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
CA [auth Y]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
CA [auth Y]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
CA [auth Y]IPR026569Large ribosomal subunit protein bL28Family
CA [auth Y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
C [auth 3]IPR000271Large ribosomal subunit protein bL34Family
DA [auth Z]IPR001854Large ribosomal subunit protein uL29Family
DA [auth Z]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
FA [auth 0]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
FA [auth 0]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
FA [auth 0]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
GA [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
GA [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
GA [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
GA [auth b]IPR001865Small ribosomal subunit protein uS2Family
HA [auth c]IPR004044K Homology domain, type 2Domain
HA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
HA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
HA [auth c]IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
HA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
HA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
HA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IA [auth e]IPR000851Small ribosomal subunit protein uS5Family
IA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IA [auth e]IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
JA [auth f]IPR000529Small ribosomal subunit protein bS6Family
JA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
JA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
JA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
KA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
KA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
KA [auth g]IPR000235Small ribosomal subunit protein uS7Family
KA [auth g]IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
KA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
LA [auth h]IPR000630Small ribosomal subunit protein uS8Family
LA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
LA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
MA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
MA [auth i]IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
MA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
MA [auth i]IPR000754Small ribosomal subunit protein uS9Family
MA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
D [auth 4]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 4]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 4]IPR001706Large ribosomal subunit protein bL35Family
D [auth 4]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
NA [auth j]IPR001848Small ribosomal subunit protein uS10Family
NA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
NA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
NA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
OA [auth k]IPR001971Small ribosomal subunit protein uS11Family
OA [auth k]IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
OA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
OA [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth l]IPR006032Small ribosomal subunit protein uS12Family
PA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
PA [auth l]IPR005679Ribosomal protein uS12, bacterial-typeFamily
QA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QA [auth m]IPR001892Small ribosomal subunit protein uS13Family
QA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
RA [auth o]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
RA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
RA [auth o]IPR000589Small ribosomal subunit protein uS15Family
SA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
SA [auth p]IPR000307Small ribosomal subunit protein bS16Family
SA [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
TA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
TA [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
TA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
TA [auth q]IPR000266Small ribosomal subunit protein uS17Family
UA [auth r]IPR001648Small ribosomal subunit protein bS18Family
UA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
UA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
VA [auth s]IPR002222Small ribosomal subunit protein uS19Family
VA [auth s]IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
VA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
VA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
E [auth 5]IPR000473Large ribosomal subunit protein bL36Family
E [auth 5]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
YA [auth y]IPR003489Ribosome hibernation promoting factor/RaiAFamily
YA [auth y]IPR034694Ribosome hibernation promoting factor, long/plastidFamily
YA [auth y]IPR036567Ribosome hibernation promotion factor-likeHomologous Superfamily
YA [auth y]IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalDomain
YA [auth y]IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyHomologous Superfamily
BB [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
BB [auth d]IPR002942RNA-binding S4 domainDomain
BB [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
BB [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
BB [auth d]IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
BB [auth d]IPR022801Small ribosomal subunit protein uS4Family
CB [auth v]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
CB [auth v]IPR000504RNA recognition motif domainDomain
CB [auth v]IPR035979RNA-binding domain superfamilyHomologous Superfamily
DB [auth n]IPR001209Small ribosomal subunit protein uS14Family
DB [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
DB [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
EB [auth x]IPR044695Small ribosomal subunit protein bTHXc/bTHXc, plantFamily
EB [auth x]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
FB [auth 8]IPR035104Ribosomal protein S1-likeFamily
FB [auth 8]IPR003029S1 domainDomain
FB [auth 8]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 6]IPR040307Large ribosomal subunit protein cL37Family
G [auth 7]IPR020526Large ribosomal subunit protein cL38Family
I [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
I [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
I [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
I [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
I [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
I [auth C]IPR002171Large ribosomal subunit protein uL2Family