5W5X
Crystal structure of BAXP168G in complex with an activating antibody
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- IMGT Antibody Annotation
- SAbDab Antibody Annotation
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | d5w5xl1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
B [auth H] | d5w5xh_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | V set domains (antibody variable domain-like) | automated matches | (Rattus norvegicus ) [TaxId: 10116 ], | SCOPe (2.08) |
C [auth A] | d5w5xa_ | Membrane and cell surface proteins and peptides | Toxins' membrane translocation domains | Bcl-2 inhibitors of programmed cell death | Bcl-2 inhibitors of programmed cell death | Proapoptotic molecule Bax | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth A] | SCOP2B Superfamily | Bcl-2-like inhibitors of programmed cell death | 8037647 | 3001974 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth L] | C1-set_4 | e5w5xL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
A [auth L] | V-set | e5w5xL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
B [auth H] | V-set_8 | e5w5xH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth H] | C1-set_1 | e5w5xH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C [auth A] | Bcl-2 | e5w5xA1 | A: alpha arrays | X: Toxins' membrane translocation domains | H: Bcl-2 inhibitors of programmed cell death (From Topology) | T: Bcl-2 inhibitors of programmed cell death | F: Bcl-2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
C [auth A] | 1.10.437.10 | Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Blc2-like | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
A [auth L] | Fab 3C10 | L-KAPPA | Rattus norvegicus (Norway rat) | IGKV22S4*01, IGKV22S7*01, IGKJ5*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | (VH-CH1)_L-KAPPA | IMGT (202415-0) |
B [auth H] | Fab 3C10 | VH-CH1 | Rattus norvegicus (Norway rat) | IGHV1-28*01, IGHJ2*01, IGHG2A*01 | V-DOMAIN VH, C-DOMAIN CH1 | IG | (VH-CH1)_L-KAPPA | IMGT (202415-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth L] | Light Chain | IGKV22 | Kappa | apoptosis regulator bax | SAbDab (2024-04-19) |
B [auth H] | Heavy Chain | IGHV1 | - | apoptosis regulator bax | SAbDab (2024-04-19) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF00452 | Apoptosis regulator proteins, Bcl-2 family (Bcl-2) | Apoptosis regulator proteins, Bcl-2 family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR036834 | Bcl-2-like superfamily | Homologous Superfamily |
C [auth A] | IPR046371 | Bcl-2, Bcl-2 homology region 1-3 | Domain |
C [auth A] | IPR020717 | Apoptosis regulator, Bcl-2, BH1 motif, conserved site | Conserved Site |
C [auth A] | IPR002475 | Bcl2-like | Family |
C [auth A] | IPR020728 | Apoptosis regulator, Bcl-2, BH3 motif, conserved site | Conserved Site |
C [auth A] | IPR020726 | Apoptosis regulator, Bcl-2, BH2 motif, conserved site | Conserved Site |
C [auth A] | IPR026298 | Bcl-2 family | Family |