5VVI

Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF03466e5vviA1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF03466ECOD (1.6)
BPF03466e5vviB2 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF03466ECOD (1.6)
CPF03466e5vviC1 A: a/b three-layered sandwichesX: Periplasmic binding protein-like II (From Topology)H: Periplasmic binding protein-like II (From Topology)T: Periplasmic binding protein-like IIF: PF03466ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF03466LysR substrate binding domain (LysR_substrate)LysR substrate binding domain- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C
Octopine catabolism/uptake operon regulatory protein OccR - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C
IPR005119LysR, substrate-bindingDomain
A, B, C
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
A, B, C
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
A, B, C
IPR037415Octopine catabolism/uptake operon regulatory protein OccR, PBP2 domainDomain
A, B, C
IPR000847Transcription regulator HTH, LysRDomain