5V6C
Crystal Structure of the Second beta-Prism Domain of RbmC from V. cholerae
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | Mannose-binding lectins | 8100574 | 3001715 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Mannose-binding lectins | 8100574 | 3001715 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Mannose-binding lectins | 8100574 | 3001715 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF16458 | e5v6cC1 | A: beta duplicates or obligate multimers | X: beta-Prism I (From Topology) | H: beta-Prism I (From Topology) | T: beta-Prism I | F: PF16458 | ECOD (1.6) |
A | PF16458 | e5v6cA1 | A: beta duplicates or obligate multimers | X: beta-Prism I (From Topology) | H: beta-Prism I (From Topology) | T: beta-Prism I | F: PF16458 | ECOD (1.6) |
B | PF16458 | e5v6cB1 | A: beta duplicates or obligate multimers | X: beta-Prism I (From Topology) | H: beta-Prism I (From Topology) | T: beta-Prism I | F: PF16458 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.100.10.30 | Mainly Beta | Aligned Prism | Vitelline Membrane Outer Layer Protein I, subunit A | Jacalin-like lectin domain | CATH (4.3.0) |
A | 2.100.10.30 | Mainly Beta | Aligned Prism | Vitelline Membrane Outer Layer Protein I, subunit A | Jacalin-like lectin domain | CATH (4.3.0) |
B | 2.100.10.30 | Mainly Beta | Aligned Prism | Vitelline Membrane Outer Layer Protein I, subunit A | Jacalin-like lectin domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16458 | Beta-prism lectin (Beta-prism_lec) | Beta-prism lectin | - | Repeat |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036404 | Jacalin-like lectin domain superfamily | Homologous Superfamily | |
IPR013517 | FG-GAP repeat | Repeat | |
IPR028994 | Integrin alpha, N-terminal | Homologous Superfamily | |
IPR040966 | Metalloprotease StcE, C-terminal | Domain | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR032496 | Hemolysin, beta-prism lectin | Domain |