5UX1

Protein 43 with aldehyde deformylating oxygenase activity from Synechococcus

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyMiaE-like8087056 4001288 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFerritin-like8087057 3001658 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF06175e5ux1A1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: PF06175ECOD (1.6)
BPF06175e5ux1B1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: PF06175ECOD (1.6)
CPF06175e5ux1C1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: PF06175ECOD (1.6)
DPF06175e5ux1D1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: Ferritin/Heme oxygenaseT: Heme oxygenase/Ribonucleotide reductaseF: PF06175ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (4.3.0)
B1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (4.3.0)
C1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (4.3.0)
D1.20.1260.10 Mainly Alpha Up-down Bundle Ferritin Ferritin, core subunit, four-helix bundleCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF06175tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) (MiaE)tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)This family consists of several bacterial tRNA-(MS(2)IO(6)A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with ...This family consists of several bacterial tRNA-(MS(2)IO(6)A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [1-2].
Domain