Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth C]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8103366 3000100 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyNucleic acid-binding proteins8052738 3000135 SCOP2B (2022-06-29)
M [auth D]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052736 3002138 SCOP2B (2022-06-29)
N [auth E]SCOP2B SuperfamilyRibosomal protein S88096922 3000709 SCOP2B (2022-06-29)
P [auth G]SCOP2B SuperfamilyNucleic acid-binding proteins8063430 3000135 SCOP2B (2022-06-29)
MA [auth e]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
NA [auth f]SCOP2B SuperfamilyL30e-like8033484 3001739 SCOP2B (2022-06-29)
D [auth 3]SCOP2B SuperfamilyGS N-terminal domain-like8053173 3000408 SCOP2B (2022-06-29)
RA [auth j]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
SA [auth k]SCOP2B Superfamilyalpha/beta knot8037153 3001122 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052760 3000334 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052758 3001473 SCOP2B (2022-06-29)
E [auth 5]SCOP2B SuperfamilyNucleic acid-binding proteins8052759 3000135 SCOP2B (2022-06-29)
F [auth 6]SCOP2B SuperfamilyRibosomal protein S78065993 3000799 SCOP2B (2022-06-29)
H [auth 8]SCOP2B Superfamily50S Ribosomal protein L14-like8053083 3000433 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
L [auth C]PF00380e5tzsC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
M [auth D]PF00366,PF16205e5tzsD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
N [auth E]PF00410e5tzsE1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
N [auth E]PF00410e5tzsE2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
O [auth F]PF01282e5tzsF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
P [auth G]PF01200e5tzsG1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
BA [auth T]PF00400e5tzsT2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
BA [auth T]PF12894e5tzsT1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF12894ECOD (1.6)
MA [auth e]PF01248e5tzse1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
NA [auth f]PF01248e5tzsf1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
OA [auth g]PF00400e5tzsg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
D [auth 3]PF01092e5tzs31 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
PA [auth h]PF01137e5tzsh2 A: a+b two layersX: IF3-likeH: EPT/RTPC-like (From Topology)T: EPT/RTPC-likeF: PF01137ECOD (1.6)
PA [auth h]PF05189e5tzsh1 A: a+b three layersX: Thioredoxin-likeH: RNA 3'-terminal phosphate cyclase, RPTC, insert domain (From Topology)T: RNA 3'-terminal phosphate cyclase, RPTC, insert domainF: PF05189ECOD (1.6)
RA [auth j]PF03587e5tzsj1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
SA [auth k]PF03587e5tzsk1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: PF03587ECOD (1.6)
ZA [auth r]PF00164e5tzsr1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
E [auth 5]PF00900e5tzs53 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
E [auth 5]PF00467,PF16121e5tzs52 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
E [auth 5]PF00900,PF01479,PF08071e5tzs51 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
F [auth 6]PF00177e5tzs61 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
G [auth 7]PF01251e5tzs72 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
H [auth 8]PF01201e5tzs81 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
I [auth 9]PF00163,PF01479e5tzs91 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
L [auth C]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
M [auth D]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth D]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
N [auth E]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
O [auth F]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
P [auth G]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
BA [auth T]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth e],
NA [auth f]
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth 3]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
PA [auth h]PF05189RNA 3'-terminal phosphate cyclase (RTC), insert domain (RTC_insert)RNA 3'-terminal phosphate cyclase (RTC), insert domainRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
PA [auth h]PF01137RNA 3'-terminal phosphate cyclase (RTC)RNA 3'-terminal phosphate cyclaseRNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation o ...RNA cyclases are a family of RNA-modifying enzymes that are conserved in all cellular organisms. They catalyse the ATP-dependent conversion of the 3'-phosphate to the 2',3'-cyclic phosphodiester at the end of RNA, in a reaction involving formation of the covalent AMP-cyclase intermediate [1]. The structure of RTC demonstrates that RTCs are comprised two domain. The larger domain contains an insert domain of approximately 100 amino acids [1].
Domain
RA [auth j],
SA [auth k]
PF03587EMG1/NEP1 methyltransferase (EMG1)EMG1/NEP1 methyltransferase- Family
ZA [auth r]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
E [auth 5]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
E [auth 5]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
E [auth 5]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
E [auth 5]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
E [auth 5]PF00467KOW motif (KOW)KOW motif- Family
F [auth 6]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
G [auth 7]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
H [auth 8]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
I [auth 9]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
I [auth 9]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]5' external transcribed spacer---
J [auth A]5' domain-associated---
K [auth B]3' domain-associated---
L [auth C]40S ribosomal protein S16-A
M [auth D]40S ribosomal protein S11-A
N [auth E]40S ribosomal protein S22-A
O [auth F]40S ribosomal protein S24-A
P [auth G]40S ribosomal protein S28-A
Q [auth H]Utp4---
R [auth I]UtpA_CTD1---
S [auth J],
T [auth K]
UtpA_CTD2---
B [auth 1]18S ribosomal RNA---
U [auth M]Beta-propeller 2---
V [auth N]Utp17---
W [auth O]Utp1---
X [auth P]Utp6---
Y [auth Q]Utp12---
Z [auth R]Utp13---
AA [auth S]Utp18---
BA [auth T]U3 small nucleolar RNA-associated protein 21,Utp21-
CA [auth U]Beta-propeller 5---
DA [auth V]Enp2---
C [auth 2]U3 snoRNA---
EA [auth W]UtpA_CTD4---
FA [auth X]Kre33---
GA [auth Y]Kre33---
HA [auth Z]Imp3---
IA [auth a]Nop56---
JA [auth b]Nop58---
KA [auth c]Nop1---
LA [auth d]Nop1---
MA [auth e],
NA [auth f]
13 kDa ribonucleoprotein-associated protein
OA [auth g]Ribosomal RNA-processing protein 9
D [auth 3]40S ribosomal protein S6-A
PA [auth h]RNA 3'-terminal phosphate cyclase-like protein
QA [auth i]Bms1,Ribosome biogenesis protein BMS1,Bms1,Ribosome biogenesis protein BMS1
RA [auth j],
SA [auth k]
Ribosomal RNA small subunit methyltransferase NEP1
TA [auth l]Utp24---
UA [auth m]Imp4---
VA [auth n]Utp30---
WA [auth o]Unassigned KH domain---
XA [auth p]Utp20---
YA [auth q]Repeat protein 2---
ZA [auth r]40S ribosomal protein S23-A
E [auth 5]40S ribosomal protein S4-A
AB [auth s],
BB [auth t],
CB [auth u]
Beta-propeller 1---
DB [auth v]Repeat protein 1---
EB [auth y]Unassigned protein helices---
FB [auth z]Unassigned RNA helices---
F [auth 6]40S ribosomal protein S5
G [auth 7]40S ribosomal protein S7-A
H [auth 8]40S ribosomal protein S8-A
I [auth 9]40S ribosomal protein S9-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth C]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
L [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
L [auth C]IPR000754Small ribosomal subunit protein uS9Family
L [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
M [auth D]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth D]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth D]IPR000266Small ribosomal subunit protein uS17Family
M [auth D]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth E]IPR000630Small ribosomal subunit protein uS8Family
N [auth E]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
N [auth E]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
O [auth F]IPR001976Small ribosomal subunit protein eS24Family
O [auth F]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
O [auth F]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
P [auth G]IPR028626Ribosomal protein eS28 conserved siteConserved Site
P [auth G]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth G]IPR000289Small ribosomal subunit protein eS28Family
BA [auth T]IPR007319Small-subunit processome, Utp21Domain
BA [auth T]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
BA [auth T]IPR019775WD40 repeat, conserved siteConserved Site
BA [auth T]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
BA [auth T]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
BA [auth T]IPR001680WD40 repeatRepeat
BA [auth T]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MA [auth e],
NA [auth f]
IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
MA [auth e],
NA [auth f]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
MA [auth e],
NA [auth f]
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
MA [auth e],
NA [auth f]
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
MA [auth e],
NA [auth f]
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
OA [auth g]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth g]IPR039241Ribosomal RNA-processing protein Rrp9-likeFamily
OA [auth g]IPR001680WD40 repeatRepeat
OA [auth g]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth 3]IPR014401Small ribosomal subunit protein eS6-likeFamily
D [auth 3]IPR001377Small ribosomal subunit protein eS6Family
D [auth 3]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
PA [auth h]IPR013792RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/betaHomologous Superfamily
PA [auth h]IPR023797RNA 3'-terminal phosphate cyclase domainDomain
PA [auth h]IPR000228RNA 3'-terminal phosphate cyclaseFamily
PA [auth h]IPR020719RNA 3'-terminal phosphate cyclase-like, conserved siteConserved Site
PA [auth h]IPR037136RNA 3'-terminal phosphate cyclase domain superfamilyHomologous Superfamily
PA [auth h]IPR016443RNA 3'-terminal phosphate cyclase type 2Family
PA [auth h]IPR013791RNA 3'-terminal phosphate cyclase, insert domainDomain
PA [auth h]IPR036553RNA 3'-terminal phosphate cyclase, insert domain superfamilyHomologous Superfamily
QA [auth i]IPR007034Ribosome biogenesis protein BMS1/TSR1, C-terminalDomain
QA [auth i]IPR039761Ribosome biogenesis protein Bms1/Tsr1Family
QA [auth i]IPR003959ATPase, AAA-type, coreDomain
QA [auth i]IPR012948AARP2CNDomain
QA [auth i]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
QA [auth i]IPR030387Bms1/Tsr1-type G domainDomain
QA [auth i]IPR037875Ribosome biogenesis protein Bms1, N-terminalDomain
RA [auth j],
SA [auth k]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
RA [auth j],
SA [auth k]
IPR005304Ribosomal biogenesis, methyltransferase, EMG1/NEP1Family
RA [auth j],
SA [auth k]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
ZA [auth r]IPR006032Small ribosomal subunit protein uS12Family
ZA [auth r]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
ZA [auth r]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
E [auth 5]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
E [auth 5]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
E [auth 5]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
E [auth 5]IPR002942RNA-binding S4 domainDomain
E [auth 5]IPR013845Small ribosomal subunit protein eS4, central regionDomain
E [auth 5]IPR000876Small ribosomal subunit protein eS4Family
E [auth 5]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
E [auth 5]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
E [auth 5]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
E [auth 5]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth 5]IPR005824KOWDomain
F [auth 6]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
F [auth 6]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
F [auth 6]IPR000235Small ribosomal subunit protein uS7Family
F [auth 6]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth 6]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
G [auth 7]IPR000554Small ribosomal subunit protein eS7Family
G [auth 7]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
H [auth 8]IPR001047Small ribosomal subunit protein eS8Family
H [auth 8]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
H [auth 8]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
H [auth 8]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
I [auth 9]IPR002942RNA-binding S4 domainDomain
I [auth 9]IPR022801Small ribosomal subunit protein uS4Family
I [auth 9]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
I [auth 9]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
I [auth 9]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
I [auth 9]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily