5T4Y
Crystal structure of BT1762-1763
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF07980,PF14322 | e5t4yA1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF07980,PF14322 | ECOD (1.6) |
C [auth B] | PF07980,PF14322 | e5t4yB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: PF07980,PF14322 | ECOD (1.6) |
B [auth D] | PF00593 | e5t4yD1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: PF00593 | ECOD (1.6) |
D [auth C] | PF00593 | e5t4yC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Ligand-gated protein channel | F: PF00593 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) | |
C [auth B] | 1.25.40.390 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B] | PF07980 | SusD family (SusD_RagB) | SusD family | - | Repeat |
A, C [auth B] | PF14322 | Starch-binding associating with outer membrane (SusD-like_3) | Starch-binding associating with outer membrane | - | Repeat |
B [auth D], D [auth C] | PF00593 | TonB dependent receptor (TonB_dep_Rec) | TonB dependent receptor | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C [auth B] | SusD homolog | - | ||
B [auth D], D [auth C] | SusC homolog | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C [auth B] | IPR012944 | RagB/SusD domain | Domain |
A, C [auth B] | IPR011990 | Tetratricopeptide-like helical domain superfamily | Homologous Superfamily |
A, C [auth B] | IPR033985 | SusD-like, N-terminal | Domain |
B [auth D], D [auth C] | IPR037066 | TonB-dependent receptor, plug domain superfamily | Homologous Superfamily |
B [auth D], D [auth C] | IPR023997 | TonB-dependent outer membrane protein SusC/RagA, conserved site | Conserved Site |
B [auth D], D [auth C] | IPR036942 | TonB-dependent receptor-like, beta-barrel domain superfamily | Homologous Superfamily |
B [auth D], D [auth C] | IPR023996 | TonB-dependent outer membrane protein, SusC/RagA | Family |
B [auth D], D [auth C] | IPR000531 | TonB-dependent receptor-like, beta-barrel | Domain |
B [auth D], D [auth C] | IPR012910 | TonB-dependent receptor, plug domain | Domain |
B [auth D], D [auth C] | IPR008969 | Carboxypeptidase-like, regulatory domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Beta-barrel transmembrane | Ligand-gated protein channels (n=22,S=24) | Outer Membrane Receptor (OMR) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Polysaccharide Utilization Proteins | SusCD complex BT2261-2264, space group P1 |