5ONU
Trimeric OmpU structure
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d5onua1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | automated matches | automated matches | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
| A | d5onua2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
| B | d5onub1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | automated matches | automated matches | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
| B | d5onub2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
| C | d5onuc1 | Membrane and cell surface proteins and peptides | Transmembrane beta-barrels | Porins | automated matches | automated matches | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
| C | d5onuc2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | (Vibrio cholerae ) [TaxId: 666 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PF13609 | e5onuA1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: PF13609 | ECOD (1.6) |
| B | PF13609 | e5onuB1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: PF13609 | ECOD (1.6) |
| C | PF13609 | e5onuC1 | A: beta barrels | X: Outer membrane meander beta-barrels | H: Porins | T: Porin | F: PF13609 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13609 | Gram-negative porin (Porin_4) | Gram-negative porin | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Outer membrane protein OmpU |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR033900 | Porin domain, Gram-negative type | Domain | |
| IPR023614 | Porin domain superfamily | Homologous Superfamily |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Beta-barrel transmembrane | Trimeric porins (n=16,S=20) | General Bacterial Porin (GBP) |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: BETA-BARREL | Beta-Barrel Membrane Proteins: Porins and Relatives | OmpU |
