5NKZ
Crystal structure of H. polymorpha ubiquitin conjugating enzyme Pex4p in complex with soluble domain of Pex22p
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | UBC-like | 8059994 | 3000570 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | UBC-like | 8059994 | 3000570 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00179 | e5nkzA1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
D [auth B] | PF00179 | e5nkzB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: PF00179 | ECOD (1.6) |
B [auth D] | PF12827 | e5nkzD1 | A: a/b three-layered sandwiches | X: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase (From Topology) | H: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase (From Topology) | T: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase | F: PF12827 | ECOD (1.6) |
C | PF12827 | e5nkzC1 | A: a/b three-layered sandwiches | X: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase (From Topology) | H: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase (From Topology) | T: NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase | F: PF12827 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (utative) |
D [auth B] | 3.10.110.10 | Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, D [auth B] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
B [auth D], C | PF12827 | Peroxisomal biogenesis protein family (Peroxin-22) | Peroxisomal biogenesis protein family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, D [auth B] | IPR000608 | Ubiquitin-conjugating enzyme E2 | Domain |
A, D [auth B] | IPR016135 | Ubiquitin-conjugating enzyme/RWD-like | Homologous Superfamily |
A, D [auth B] | IPR023313 | Ubiquitin-conjugating enzyme, active site | Active Site |
B [auth D], C | IPR024359 | Peroxisome assembly protein 22 | Family |
B [auth D], C | IPR038613 | Peroxin 22, C-terminal domain superfamiliy | Homologous Superfamily |