5NJT

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8063832 3001397 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyAlpha-L RNA-binding motif8083390 3001473 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein S68066497 3001323 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S78066029 3000799 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S88079051 3000709 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082667 3000100 SCOP2B (2022-06-29)
JSCOP2 FamilyRibosomal protein S108098571 4001240 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyRibosomal protein S108098572 3001336 SCOP2 (2022-06-29)
KSCOP2 FamilyRibosomal protein L18p and S118098277 4000555 SCOP2 (2022-06-29)
KSCOP2 SuperfamilyTranslational machinery components8098278 3000571 SCOP2 (2022-06-29)
LSCOP2B SuperfamilyNucleic acid-binding proteins8098574 3000135 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyS13-like H2TH domain8098564 3000053 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052595 3000068 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyS15/NS1 RNA-binding domain8072617 3001284 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyRibosomal protein S168066553 3000680 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyNucleic acid-binding proteins8059270 3000135 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyRibosomal protein S198086056 3000686 SCOP2B (2022-06-29)
XSCOP2B SuperfamilyTranslational proteins8089142 3000811 SCOP2B (2022-06-29)
YSCOP2B SuperfamilyRibosomal protein L48080694 3001146 SCOP2B (2022-06-29)
ZSCOP2B SuperfamilyRL5-like8073858 3001709 SCOP2B (2022-06-29)
CA [auth c]SCOP2B SuperfamilyRibosomal protein L138066055 3001134 SCOP2B (2022-06-29)
DA [auth d]SCOP2B Superfamily50S Ribosomal protein L14-like8072020 3000433 SCOP2B (2022-06-29)
EA [auth e]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070559 3001045 SCOP2B (2022-06-29)
FA [auth f]SCOP2B SuperfamilyRibosomal protein L16p/L10e8076039 3000884 SCOP2B (2022-06-29)
GA [auth g]SCOP2B SuperfamilyProkaryotic ribosomal protein L178089014 3000995 SCOP2B (2022-06-29)
IA [auth i]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082419 3000334 SCOP2B (2022-06-29)
JA [auth j]SCOP2B SuperfamilyRibosomal protein L208075004 3000563 SCOP2B (2022-06-29)
KA [auth k]SCOP2B Superfamilyl21p-like8082437 3002005 SCOP2B (2022-06-29)
LA [auth l]SCOP2B SuperfamilyRibosomal protein L228076724 3001078 SCOP2B (2022-06-29)
MA [auth m]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077095 3000210 SCOP2B (2022-06-29)
NA [auth n]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082505 3000334 SCOP2B (2022-06-29)
OA [auth o]SCOP2B SuperfamilyRibosomal L27 protein-like8075028 3000539 SCOP2B (2022-06-29)
PA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins8081585 3001320 SCOP2B (2022-06-29)
QA [auth q]SCOP2B SuperfamilyZn-binding ribosomal proteins8075070 3001320 SCOP2B (2022-06-29)
SA [auth s]SCOP2B SuperfamilyL35p-like8083342 3000790 SCOP2B (2022-06-29)
TA [auth t]SCOP2B SuperfamilyRibosomal protein L368083304 3001346 SCOP2B (2022-06-29)
UA [auth u]SCOP2B SuperfamilyL28p-like8089402 3001966 SCOP2B (2022-06-29)
VA [auth v]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8076730 3000713 SCOP2B (2022-06-29)
WA [auth w]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076285 3001378 SCOP2B (2022-06-29)
XA [auth y]SCOP2B SuperfamilyL28p-like8086124 3001966 SCOP2B (2022-06-29)
YA [auth x]SCOP2 FamilyYfiA-like8098609 4003461 SCOP2 (2022-06-29)
YA [auth x]SCOP2 SuperfamilyYfiA/CsgE-like8098610 3000912 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_S2e5njtB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
CRibosomal_S3_Ce5njtC2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
CKH_2_1e5njtC1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
DS4e5njtD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
ERibosomal_S5_Ce5njtE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
ERibosomal_S5e5njtE1 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
FRibosomal_S6e5njtF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
GRibosomal_S7_1e5njtG1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
HRibosomal_S8_Ne5njtH1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
HRibosomal_S8_Ce5njtH2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
IRibosomal_S9e5njtI1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
JRibosomal_S10e5njtJ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)
KRibosomal_S11e5njtK1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
LRibosom_S12_S23e5njtL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
MRibosomal_S13_1e5njtM1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
NRibosomal_S14e5njtN1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14ECOD (1.6)
ORibosomal_S15_1e5njtO1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
PRibosomal_S16_1e5njtP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16_1ECOD (1.6)
QRibosomal_S17_1e5njtQ1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
RRibosomal_S18e5njtR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
SRibosomal_S19e5njtS1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
TRibosomal_S20pe5njtT1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
WRibosomal_L2_1e5njtW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
WRibosomal_L2_Ce5njtW2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
XRibosomal_L3e5njtX1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
YRibosomal_L4e5njtY1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
ZRibosomal_L5_Ce5njtZ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
AA [auth a]Ribosomal_L6e5njta2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
AA [auth a]Ribosomal_L6_1e5njta1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
BA [auth b]Ribosomal_L10e5njtb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
CA [auth c]Ribosomal_L13e5njtc1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
DA [auth d]Ribosomal_L14e5njtd1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
EA [auth e]Ribosomal_L27Ae5njte1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
FA [auth f]Ribosomal_L16e5njtf1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
GA [auth g]Ribosomal_L17_1e5njtg1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
HA [auth h]Ribosomal_L18pe5njth1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
IA [auth i]Ribosomal_L19e5njti1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
JA [auth j]Ribosomal_L20e5njtj1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KA [auth k]Ribosomal_L21pe5njtk1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
LA [auth l]Ribosomal_L22e5njtl1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
MA [auth m]Ribosomal_L23_2e5njtm1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
NA [auth n]ribosomal_L24_1e5njtn1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
OA [auth o]Ribosomal_L27e5njto1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
PA [auth p]Ribosomal_L32pe5njtp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
QA [auth q]Ribosomal_L33e5njtq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
RA [auth r]Ribosomal_L34e5njtr1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
SA [auth s]Ribosomal_L35pe5njts1 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
TA [auth t]Ribosomal_L36e5njtt1 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
UA [auth u]Ribosomal_L28e5njtu1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
VA [auth v]Ribosomal_L29e5njtv1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
WA [auth w]Ribosomal_L30e5njtw1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
XA [auth y]Ribosomal_L31e5njty1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
YA [auth x]Ribosomal_S30AEe5njtx1 A: a+b two layersX: dsRBD-likeH: Ribosome binding protein Y (YfiA homologue) (From Topology)T: Ribosome binding protein Y (YfiA homologue)F: Ribosomal_S30AEECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
PF07650KH domain (KH_2)KH domain- Domain
PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6- Domain
PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
AA [auth a]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
BA [auth b]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
CA [auth c]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
DA [auth d]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
EA [auth e]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
FA [auth f]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
GA [auth g]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
HA [auth h]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
IA [auth i]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
JA [auth j]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
KA [auth k]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
LA [auth l]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
MA [auth m]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
NA [auth n]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
NA [auth n]PF00467KOW motif (KOW)KOW motif- Family
OA [auth o]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
PA [auth p]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
QA [auth q]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
RA [auth r]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
SA [auth s]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
TA [auth t]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
UA [auth u]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
VA [auth v]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
WA [auth w]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
XA [auth y]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
YA [auth x]PF02482Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE)Sigma 54 modulation protein / S30EA ribosomal protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
16S ribosomal RNA---
30S ribosomal protein S2
30S ribosomal protein S3
30S ribosomal protein S4
30S ribosomal protein S5
30S ribosomal protein S6
30S ribosomal protein S7
30S ribosomal protein S8
30S ribosomal protein S9
30S ribosomal protein S10
30S ribosomal protein S11
30S ribosomal protein S12
30S ribosomal protein S13
30S ribosomal protein S14
30S ribosomal protein S15
30S ribosomal protein S16
30S ribosomal protein S17
30S ribosomal protein S18
30S ribosomal protein S19
30S ribosomal protein S20
23S ribosomal RNA---
5S ribosomal RNA---
50S ribosomal protein L2
50S ribosomal protein L3
50S ribosomal protein L4
50S ribosomal protein L5
AA [auth a]50S ribosomal protein L6
BA [auth b]50S ribosomal protein L10
CA [auth c]50S ribosomal protein L13
DA [auth d]50S ribosomal protein L14
EA [auth e]50S ribosomal protein L15
FA [auth f]50S ribosomal protein L16
GA [auth g]50S ribosomal protein L17
HA [auth h]50S ribosomal protein L18
IA [auth i]50S ribosomal protein L19
JA [auth j]50S ribosomal protein L20
KA [auth k]50S ribosomal protein L21
LA [auth l]50S ribosomal protein L22
MA [auth m]50S ribosomal protein L23
NA [auth n]50S ribosomal protein L24
OA [auth o]50S ribosomal protein L27
PA [auth p]50S ribosomal protein L32
QA [auth q]50S ribosomal protein L33 1
RA [auth r]50S ribosomal protein L34
SA [auth s]50S ribosomal protein L35
TA [auth t]50S ribosomal protein L36
UA [auth u]50S ribosomal protein L28
VA [auth v]50S ribosomal protein L29
WA [auth w]50S ribosomal protein L30
XA [auth y]50S ribosomal protein L31
YA [auth x]Ribosome hibernation promotion factor

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
IPR001865Small ribosomal subunit protein uS2Family
IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
IPR004087K Homology domainDomain
IPR004044K Homology domain, type 2Domain
IPR015946K homology domain-like, alpha/betaHomologous Superfamily
IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
IPR005704Small ribosomal subunit protein uS3, bacterial-typeFamily
IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR002942RNA-binding S4 domainDomain
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IPR005709Small ribosomal subunit protein uS4, bacterial-typeFamily
IPR022801Small ribosomal subunit protein uS4Family
IPR000851Small ribosomal subunit protein uS5Family
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR005712Small ribosomal subunit protein uS5, bacterial-typeFamily
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
IPR000529Small ribosomal subunit protein bS6Family
IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
IPR000235Small ribosomal subunit protein uS7Family
IPR005717Small ribosomal subunit protein uS7, bacterial/organellar-typeFamily
IPR023798Small ribosomal subunit protein uS7 domainDomain
IPR000630Small ribosomal subunit protein uS8Family
IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IPR023035Small ribosomal subunit protein uS9, bacterial/plastidFamily
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR000754Small ribosomal subunit protein uS9Family
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR001848Small ribosomal subunit protein uS10Family
IPR027486Small ribosomal subunit protein uS10 domainDomain
IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IPR001971Small ribosomal subunit protein uS11Family
IPR019981Small ribosomal subunit protein uS11, bacterial-typeFamily
IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR006032Small ribosomal subunit protein uS12Family
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR005679Ribosomal protein uS12, bacterial-typeFamily
IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
IPR001892Small ribosomal subunit protein uS13Family
IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR019980Small ribosomal subunit protein uS13, bacterial-typeFamily
IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
IPR001209Small ribosomal subunit protein uS14Family
IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
IPR000589Small ribosomal subunit protein uS15Family
IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
IPR000307Small ribosomal subunit protein bS16Family
IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR001648Small ribosomal subunit protein bS18Family
IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
IPR002222Small ribosomal subunit protein uS19Family
IPR005732Small ribosomal subunit protein uS19, bacterial-typeFamily
IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
IPR002583Small ribosomal subunit protein bS20Family
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR013005Large ribosomal subunit protein uL4-likeFamily
IPR002136Large ribosomal subunit protein uL4Family
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
IPR002132Large ribosomal subunit protein uL5Family
AA [auth a]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
AA [auth a]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
AA [auth a]IPR000702Large ribosomal subunit protein uL6-likeFamily
AA [auth a]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
AA [auth a]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
BA [auth b]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
BA [auth b]IPR001790Large ribosomal subunit protein uL10Family
BA [auth b]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
BA [auth b]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
BA [auth b]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
CA [auth c]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
CA [auth c]IPR005822Large ribosomal subunit protein uL13Family
CA [auth c]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
CA [auth c]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
DA [auth d]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
DA [auth d]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
DA [auth d]IPR000218Large ribosomal subunit protein uL14Family
DA [auth d]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
EA [auth e]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
EA [auth e]IPR021131Large ribosomal subunit protein uL15/eL18Domain
EA [auth e]IPR030878Large ribosomal subunit protein uL15Family
EA [auth e]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
EA [auth e]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
FA [auth f]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
FA [auth f]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
FA [auth f]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
FA [auth f]IPR016180Large ribosomal subunit protein uL16 domainDomain
FA [auth f]IPR047873Large ribosomal subunit protein uL16Family
GA [auth g]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
GA [auth g]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
GA [auth g]IPR000456Large ribosomal subunit protein bL17Family
HA [auth h]IPR005484Large ribosomal subunit protein uL18Family
HA [auth h]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
IA [auth i]IPR001857Large ribosomal subunit protein bL19Family
IA [auth i]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
IA [auth i]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
IA [auth i]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JA [auth j]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
JA [auth j]IPR005813Large ribosomal subunit protein bL20Family
KA [auth k]IPR028909Large ribosomal subunit protein bL21-likeFamily
KA [auth k]IPR001787Large ribosomal subunit protein bL21Family
KA [auth k]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
KA [auth k]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
LA [auth l]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
LA [auth l]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
LA [auth l]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
LA [auth l]IPR001063Large ribosomal subunit protein uL22Family
LA [auth l]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
MA [auth m]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
MA [auth m]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
MA [auth m]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
MA [auth m]IPR013025Large ribosomal subunit protein uL23-likeFamily
NA [auth n]IPR003256Large ribosomal subunit protein uL24Family
NA [auth n]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
NA [auth n]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
NA [auth n]IPR005824KOWDomain
NA [auth n]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
NA [auth n]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
OA [auth o]IPR001684Large ribosomal subunit protein bL27Family
OA [auth o]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
PA [auth p]IPR002677Large ribosomal subunit protein bL32Family
PA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
PA [auth p]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
QA [auth q]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
QA [auth q]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
QA [auth q]IPR001705Large ribosomal subunit protein bL33Family
QA [auth q]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
RA [auth r]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
RA [auth r]IPR000271Large ribosomal subunit protein bL34Family
SA [auth s]IPR021137Large ribosomal subunit protein bL35-likeFamily
SA [auth s]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
SA [auth s]IPR001706Large ribosomal subunit protein bL35Family
SA [auth s]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
TA [auth t]IPR000473Large ribosomal subunit protein bL36Family
TA [auth t]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
UA [auth u]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
UA [auth u]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
UA [auth u]IPR026569Large ribosomal subunit protein bL28Family
UA [auth u]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
VA [auth v]IPR001854Large ribosomal subunit protein uL29Family
VA [auth v]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
VA [auth v]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
WA [auth w]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
WA [auth w]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
WA [auth w]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
WA [auth w]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
XA [auth y]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
XA [auth y]IPR027491Large ribosomal subunit protein bL31 type AFamily
XA [auth y]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
XA [auth y]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
YA [auth x]IPR003489Ribosome hibernation promoting factor/RaiAFamily
YA [auth x]IPR034694Ribosome hibernation promoting factor, long/plastidFamily
YA [auth x]IPR036567Ribosome hibernation promotion factor-likeHomologous Superfamily
YA [auth x]IPR032528Sigma 54 modulation/S30EA ribosomal protein, C-terminalDomain
YA [auth x]IPR038416Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamilyHomologous Superfamily