5MMJ
Structure of the small subunit of the chloroplast ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth h] | SCOP2B Superfamily | Ribosomal protein S8 | 8079063 | 3000709 | SCOP2B (2022-06-29) |
K [auth i] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082673 | 3000100 | SCOP2B (2022-06-29) |
L [auth j] | SCOP2B Superfamily | Ribosomal protein S10 | 8098942 | 3001336 | SCOP2B (2022-06-29) |
M [auth k] | SCOP2B Superfamily | Translational machinery components | 8098296 | 3000571 | SCOP2B (2022-06-29) |
N [auth l] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8098842 | 3000135 | SCOP2B (2022-06-29) |
O [auth m] | SCOP2B Superfamily | S13-like H2TH domain | 8098944 | 3000053 | SCOP2B (2022-06-29) |
P [auth n] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052598 | 3000068 | SCOP2B (2022-06-29) |
Q [auth o] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8072637 | 3001284 | SCOP2B (2022-06-29) |
R [auth p] | SCOP2B Superfamily | Ribosomal protein S16 | 8066569 | 3000680 | SCOP2B (2022-06-29) |
S [auth q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059282 | 3000135 | SCOP2B (2022-06-29) |
U [auth s] | SCOP2B Superfamily | Ribosomal protein S19 | 8086060 | 3000686 | SCOP2B (2022-06-29) |
W [auth u] | SCOP2B Superfamily | Ribosomal protein S21 | 8060183 | 3002159 | SCOP2B (2022-06-29) |
AA [auth y] | SCOP2B Superfamily | YfiA/CsgE-like | 8076007 | 3000912 | SCOP2B (2022-06-29) |
D [auth b] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8098310 | 3001397 | SCOP2B (2022-06-29) |
F [auth d] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083404 | 3001473 | SCOP2B (2022-06-29) |
I [auth g] | SCOP2B Superfamily | Ribosomal protein S7 | 8077983 | 3000799 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth h] | PF00410 | e5mmjh2 | A: a+b two layers | X: R3H domain-like | H: Ribosomal protein S8, N-terminal domain (From Topology) | T: Ribosomal protein S8, N-terminal domain | F: PF00410 | ECOD (1.6) |
J [auth h] | PF00410 | e5mmjh1 | A: a+b two layers | X: Ribosomal protein S8, C-terminal domain (From Topology) | H: Ribosomal protein S8, C-terminal domain (From Topology) | T: Ribosomal protein S8, C-terminal domain | F: PF00410 | ECOD (1.6) |
K [auth i] | PF00380 | e5mmji1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
L [auth j] | PF00338 | e5mmjj1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
M [auth k] | PF00411 | e5mmjk1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF00411 | ECOD (1.6) |
N [auth l] | PF00164 | e5mmjl1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00164 | ECOD (1.6) |
O [auth m] | PF00416 | e5mmjm1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
P [auth n] | PF00253 | e5mmjn1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
Q [auth o] | PF00312 | e5mmjo1 | A: alpha arrays | X: S15/NS1 RNA-binding domain (From Topology) | H: S15/NS1 RNA-binding domain (From Topology) | T: S15/NS1 RNA-binding domain | F: PF00312 | ECOD (1.6) |
R [auth p] | PF00886 | e5mmjp1 | A: a+b two layers | X: Ribosomal protein S16 (From Topology) | H: Ribosomal protein S16 (From Topology) | T: Ribosomal protein S16 | F: PF00886 | ECOD (1.6) |
S [auth q] | PF00366 | e5mmjq1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00366 | ECOD (1.6) |
T [auth r] | PF01084 | e5mmjr1 | A: alpha arrays | X: HTH | H: HTH | T: tri-helical | F: PF01084 | ECOD (1.6) |
U [auth s] | PF00203 | e5mmjs1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
V [auth t] | PF01649 | e5mmjt1 | A: alpha bundles | X: Spectrin repeat-like | H: Ribosomal protein S20 (From Topology) | T: Ribosomal protein S20 | F: PF01649 | ECOD (1.6) |
W [auth u] | PF01165 | e5mmju1 | A: extended segments | X: 30S ribosomal protein S21 (From Topology) | H: 30S ribosomal protein S21 (From Topology) | T: 30S ribosomal protein S21 | F: PF01165 | ECOD (1.6) |
X [auth v] | PF00076 | e5mmjv1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
Y [auth w] | PF04839 | e5mmjw1 | A: a+b two layers | X: Probable 30S ribosomal protein PSRP-3 (From Topology) | H: Probable 30S ribosomal protein PSRP-3 (From Topology) | T: Probable 30S ribosomal protein PSRP-3 | F: PF04839 | ECOD (1.6) |
AA [auth y] | PF02482 | e5mmjy1 | A: a+b two layers | X: dsRBD-like | H: Ribosome binding protein Y (YfiA homologue) (From Topology) | T: Ribosome binding protein Y (YfiA homologue) | F: PF02482 | ECOD (1.6) |
D [auth b] | PF00318 | e5mmjb1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Ribosomal protein S2/SIS domain (From Topology) | T: Ribosomal protein S2/SIS domain | F: PF00318 | ECOD (1.6) |
E [auth c] | PF00189 | e5mmjc2 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
E [auth c] | F_UNCLASSIFIED | e5mmjc1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: F_UNCLASSIFIED | ECOD (1.6) |
F [auth d] | PF00163,PF01479 | e5mmjd1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Alpha-L RNA-binding motif | F: PF00163,PF01479 | ECOD (1.6) |
H [auth f] | PF01250 | e5mmjf1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S6 (From Topology) | T: Ribosomal protein S6 | F: PF01250 | ECOD (1.6) |
I [auth g] | PF00177 | e5mmjg1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 0] | PF01197 | Ribosomal protein L31 (Ribosomal_L31) | Ribosomal protein L31 | - | Family |
J [auth h] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | - | Domain |
K [auth i] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
L [auth j] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
M [auth k] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
N [auth l] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | - | Family |
O [auth m] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
P [auth n] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
Q [auth o] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | - | Domain |
R [auth p] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
S [auth q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | - | Domain |
T [auth r] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
U [auth s] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | - | Domain |
W [auth u] | PF01165 | Ribosomal protein S21 (Ribosomal_S21) | Ribosomal protein S21 | - | Family |
X [auth v] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Y [auth w] | PF04839 | Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) (PSRP-3_Ycf65) | Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65) | - | Family |
Z [auth x] | PF17067 | Ribosomal protein S31e (RPS31) | Ribosomal protein S31e | - | Family |
AA [auth y] | PF02482 | Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE) | Sigma 54 modulation protein / S30EA ribosomal protein | - | Family |
D [auth b] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
E [auth c] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
F [auth d] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
F [auth d] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
G [auth e] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | - | Domain |
G [auth e] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | - | Domain |
H [auth f] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | - | Domain |
I [auth g] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |