5M3C
Structure of the hybrid domain (GGDEF-EAL) of PA0575 from Pseudomonas aeruginosa PAO1 at 2.8 Ang. with GTP and Ca2+ bound to the active site of the GGDEF domain
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GGDEF | e5m3cA1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: GGDEF | ECOD (1.6) |
A | EAL | e5m3cA2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: EAL | ECOD (1.6) |
B | GGDEF | e5m3cB1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: GGDEF | ECOD (1.6) |
B | EAL | e5m3cB2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: EAL domain (From Topology) | T: EAL domain | F: EAL | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
A | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
B | 3.30.70.270 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Reverse transcriptase/Diguanylate cyclase domain | CATH (4.3.0) |
B | 3.20.20.450 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | EAL domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00990 | Diguanylate cyclase, GGDEF domain (GGDEF) | Diguanylate cyclase, GGDEF domain | This domain is found linked to a wide range of non-homologous domains in a variety of bacteria. It has been shown to be homologous to the adenylyl cyclase catalytic domain [1] and has diguanylate cyclase activity [4]. This observation correlates with ... | Domain | |
PF00563 | EAL domain (EAL) | EAL domain | This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function [1]. The domain contains many conserved acidic residues tha ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Diguanylate cyclase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035965 | PAS domain superfamily | Homologous Superfamily | |
IPR001610 | PAC motif | Repeat | |
IPR000700 | PAS-associated, C-terminal | Domain | |
IPR013655 | PAS fold-3 | Domain | |
IPR000014 | PAS domain | Domain | |
IPR000160 | GGDEF domain | Domain | |
IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF | Domain | |
IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | Homologous Superfamily | |
IPR001633 | EAL domain | Domain | |
IPR035919 | EAL domain superfamily | Homologous Superfamily | |
IPR029787 | Nucleotide cyclase | Homologous Superfamily |