5L9U

Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyWD40 repeat-like8106386 3001694 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyWD40 repeat-like8106386 3001694 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyWinged helix DNA-binding domain8084656 3000034 SCOP2B (2022-06-29)
LSCOP2B Superfamilygalactose-binding domain-like8037020 3000087 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyWD40 repeat-like8106390 3001694 SCOP2B (2022-06-29)
S [auth U]SCOP2B SuperfamilyUBC-like8033738 3000570 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRING/U-box like8082719 3000160 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyTPR-like8057064 3001345 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyTPR-like8057064 3001345 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyAnaphase-promoting complex subunit 16-like8053719 3002218 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCDC26-like8053843 3002235 SCOP2B (2022-06-29)
T [auth W]SCOP2B SuperfamilyCDC26-like8053843 3002235 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
FTPR_11_7e5l9uF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
HTPR_11_7e5l9uH1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
IANAPC4_WD40e5l9uI2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40ECOD (1.6)
IANAPC4e5l9uI1 A: alpha bundlesX: Four-helical up-and-down bundleH: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology)T: Helical bundle domain in anaphase-promoting complex subunit 4F: ANAPC4ECOD (1.6)
JTPR_11_7e5l9uJ1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
KTPR_11_7e5l9uK1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_7ECOD (1.6)
NANAPC2e5l9uN5 A: alpha arraysX: HTHH: HTHT: wingedF: ANAPC2ECOD (1.6)
NCullin_4the5l9uN4 A: alpha arraysX: HTHH: HTHT: wingedF: Cullin_4thECOD (1.6)
NCullin_2nde5l9uN1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Cullin_2ndECOD (1.6)
NKOG2165e5l9uN2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG2165ECOD (1.6)
NCullin_3rde5l9uN3 A: a+b duplicates or obligate multimersX: a+b domain in cullin-like proteins (From Topology)H: a+b domain in cullin-like proteins (From Topology)T: a+b domain in cullin-like proteinsF: Cullin_3rdECOD (1.6)
OApc5_Ne5l9uO1 A: alpha arraysX: SHQ1 C-terminal domain-likeH: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology)T: Anaphase-promoting complex subunit 5 N-terminal domainF: Apc5_NECOD (1.6)
OANAPC5e5l9uO2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC5ECOD (1.6)
AANAPC1e5l9uA2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC1ECOD (1.6)
AKOG1858_2nde5l9uA1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Proteasome/cyclosome (PC) repeat (From Topology)T: Proteasome/cyclosome (PC) repeatF: KOG1858_2ndECOD (1.6)
AKOG1858_1ste5l9uA3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 first helical domain (From Topology)T: Anaphase-promoting complex subunit 1 first helical domainF: KOG1858_1stECOD (1.6)
AKOG1858_4the5l9uA4 A: alpha superhelicesX: Repetitive alpha hairpinsH: Anaphase-promoting complex subunit 1 second helical domain (From Topology)T: Anaphase-promoting complex subunit 1 second helical domainF: KOG1858_4thECOD (1.6)
LANAPC10e5l9uL1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: ANAPC10ECOD (1.6)
Q [auth R]ANAPC4_WD40_1e5l9uR1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_1ECOD (1.6)
S [auth U]UQ_cone5l9uU1 A: a+b two layersX: UBC-likeH: UBC-like (From Topology)T: UBC-likeF: UQ_conECOD (1.6)
U [auth X]TPR_19,ANAPC8e5l9uX1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_19,ANAPC8ECOD (1.6)
V [auth Y]TPR_19,ANAPC8e5l9uY1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_19,ANAPC8ECOD (1.6)
Bzf-rbx1e5l9uB1 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: RING/U-boxF: zf-rbx1ECOD (1.6)
CKOG1155,ANAPC8e5l9uC1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG1155,ANAPC8ECOD (1.6)
PANAPC8e5l9uP1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: ANAPC8ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F, H
PF12895Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)Anaphase-promoting complex, cyclosome, subunit 3- Repeat
F, H
PF00515Tetratricopeptide repeat (TPR_1)Tetratricopeptide repeat- Repeat
PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
J, K
PF13424Tetratricopeptide repeat (TPR_12)Tetratricopeptide repeat- Repeat
PF08672Anaphase promoting complex (APC) subunit 2 (ANAPC2)Anaphase promoting complex (APC) subunit 2The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate prot ...The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate protein.
Domain
PF12862Anaphase-promoting complex subunit 5 (ANAPC5)Anaphase-promoting complex subunit 5- Repeat
PF21371Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N)Anaphase-promoting complex subunit 5, N-terminal domainThis domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ...This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. This domain has an alpha-helical fold [1-4]. It is normally found in association with Pfam:PF12862.
Domain
R [auth S]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
PF20518Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN)Anaphase-promoting complex subunit 1 middle domain- Repeat
PF21282APC1 beta sandwich domain (APC1_3rd)APC1 beta sandwich domainThis domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ...This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle.
Domain
PF03256Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10)Anaphase-promoting complex, subunit 10 (APC10)- Family
PF05839Apc13p protein (Apc13p)Apc13p protein- Family
Q [auth R]PF12894Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40)Anaphase-promoting complex subunit 4 WD40 domain- Repeat
Q [auth R]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
S [auth U]PF00179Ubiquitin-conjugating enzyme (UQ_con)Ubiquitin-conjugating enzymeProteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].
Domain
U [auth X],
V [auth Y]
PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
PF12861Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11)Anaphase-promoting complex subunit 11 RING-H2 finger- Family
C, P
PF04049Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8)Anaphase promoting complex subunit 8 / Cdc23- Repeat
PF15243Anaphase-promoting complex subunit 15 (ANAPC15)Anaphase-promoting complex subunit 15- Family
PF17256Anaphase-promoting complex, subunit 16 (ANAPC16)Anaphase-promoting complex, subunit 16- Family
G,
T [auth W]
PF10471Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26)Anaphase-promoting complex APC subunit CDC26- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F, H
Cell division cycle protein 27 homolog
Anaphase-promoting complex subunit 4
J, K
Cell division cycle protein 16 homolog-
Anaphase-promoting complex subunit 2
Anaphase-promoting complex subunit 5
R [auth S]Hsl1(substrate)_peptide-Ubiquitin_variant fusion
Anaphase-promoting complex subunit 1
Anaphase-promoting complex subunit 10-
Anaphase-promoting complex subunit 13-
Q [auth R]Fizzy-related protein homolog
S [auth U]Ubiquitin-conjugating enzyme E2 C
U [auth X],
V [auth Y]
Anaphase-promoting complex subunit 7
Anaphase-promoting complex subunit 11
C, P
Cell division cycle protein 23 homolog
Anaphase-promoting complex subunit 15-
Anaphase-promoting complex subunit 16-
G,
T [auth W]
Anaphase-promoting complex subunit CDC26-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F, H
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
F, H
IPR001440TPR_1Unknown
F, H
IPR019734Tetratricopeptide repeatRepeat
IPR017169Anaphase-promoting complex subunit 4, metazoaFamily
IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
IPR024789Anaphase-promoting complex subunit 4Family
IPR024790Anaphase-promoting complex subunit 4, long domainDomain
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
J, K
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
J, K
IPR019734Tetratricopeptide repeatRepeat
IPR014786Anaphase-promoting complex subunit 2, C-terminalDomain
IPR016158Cullin homology domainDomain
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
IPR036317Cullin homology domain superfamilyHomologous Superfamily
IPR044554Anaphase-promoting complex subunit 2Family
IPR001373Cullin, N-terminalDomain
IPR026000Anaphase-promoting complex subunit 5 domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR037679Anaphase-promoting complex subunit 5Family
IPR019734Tetratricopeptide repeatRepeat
IPR048968Anaphase-promoting complex subunit 5, N-terminal domainDomain
R [auth S]IPR019954Ubiquitin conserved siteConserved Site
R [auth S]IPR000626Ubiquitin-like domainDomain
R [auth S]IPR019956Ubiquitin domainDomain
R [auth S]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
R [auth S]IPR017441Protein kinase, ATP binding siteBinding Site
R [auth S]IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
R [auth S]IPR000719Protein kinase domainDomain
R [auth S]IPR008271Serine/threonine-protein kinase, active siteActive Site
IPR041221Anaphase-promoting complex subunit 1, C-terminalDomain
IPR046794Anaphase-promoting complex subunit 1, middle domainDomain
IPR024990Anaphase-promoting complex subunit 1Family
IPR048971Anaphase-promoting complex subunit 1, beta-sandwich domainDomain
IPR049255Anaphase-promoting complex subunit 1, N-terminal domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR016901Anaphase-promoting complex subunit APC10/Doc1Family
IPR004939APC10/DOC domainDomain
IPR008979Galactose-binding-like domain superfamilyHomologous Superfamily
IPR008401Apc13Family
Q [auth R]IPR019775WD40 repeat, conserved siteConserved Site
Q [auth R]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth R]IPR024977Anaphase-promoting complex subunit 4-like, WD40 domainDomain
Q [auth R]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Q [auth R]IPR001680WD40 repeatRepeat
Q [auth R]IPR033010WD repeat Cdc20/FizzyFamily
S [auth U]IPR016135Ubiquitin-conjugating enzyme/RWD-likeHomologous Superfamily
S [auth U]IPR000608Ubiquitin-conjugating enzyme E2Domain
S [auth U]IPR023313Ubiquitin-conjugating enzyme, active siteActive Site
U [auth X],
V [auth Y]
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
U [auth X],
V [auth Y]
IPR019734Tetratricopeptide repeatRepeat
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
IPR024991Anaphase-promoting complex subunit 11, RING-H2 fingerDomain
IPR001841Zinc finger, RING-typeDomain
C, P
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C, P
IPR007192Cdc23Domain
C, P
IPR019734Tetratricopeptide repeatRepeat
IPR026182Anaphase-promoting complex subunit 15Family
IPR029641Anaphase-promoting complex subunit 16Family
G,
T [auth W]
IPR018860Anaphase-promoting complex, subunit CDC26Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
F, H
PharosP30260
PharosQ9UJX5
J, K
PharosQ13042
PharosQ9UJX6
PharosQ9UJX4
PharosQ9H1A4
PharosQ9UM13
PharosQ9BS18
Q [auth R]PharosQ9UM11
S [auth U]PharosO00762
U [auth X],
V [auth Y]
PharosQ9UJX3
PharosQ9NYG5
C, P
PharosQ9UJX2
PharosP60006
PharosQ96DE5
G,
T [auth W]
PharosQ8NHZ8