5DO0

The structure of PKMT1 from Rickettsia prowazekii

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth B]SCOP2B SuperfamilyWinged helix DNA-binding domain8090244 3000034 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8090236 3000118 SCOP2B (2022-06-29)
A [auth B]SCOP2B SuperfamilyWinged helix DNA-binding domain8090245 3000034 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyWinged helix DNA-binding domain8090245 3000034 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyWinged helix DNA-binding domain8090244 3000034 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases8090236 3000118 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth B]COG4797_1ste5do0B2 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_1stECOD (1.6)
A [auth B]COG4797_2nde5do0B3 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_2ndECOD (1.6)
A [auth B]Methyltransf_11_1e5do0B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltransf_11_1ECOD (1.6)
B [auth A]COG4797_1ste5do0A3 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_1stECOD (1.6)
B [auth A]COG4797_2nde5do0A2 A: alpha arraysX: HTHH: HTHT: wingedF: COG4797_2ndECOD (1.6)
B [auth A]Methyltransf_11_1e5do0A1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: Methyltransf_11_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B],
B [auth A]		PF21782PKMT, C-terminal winged helix domain (PKMT_2nd)PKMT, C-terminal winged helix domainThis entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain ...This entry represents the C-terminal winged helix domain of PKMTs. PKMTs are protein-lysine methyltransferases that catalyze the methylation of lysine residues on many different proteins. They consist of N-terminal S-adenosylmethionine binding domain, a middle domain and a C-terminal domain. The middle and the C-terminal domain share significant structural similarity and are both distantly related to HTH winged helix DNA-binding domains.
Domain
A [auth B],
B [auth A]		PF13847Methyltransferase domain (Methyltransf_31)Methyltransferase domainThis family appears to have methyltransferase activity.Domain
A [auth B],
B [auth A]		PF10119Predicted methyltransferase regulatory domain (MethyTransf_Reg)Predicted methyltransferase regulatory domain- Family

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B],
B [auth A]		IPR025714Methyltransferase domainDomain
A [auth B],
B [auth A]		IPR048976PKMT, C-terminal winged helix domainDomain
A [auth B],
B [auth A]		IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A [auth B],
B [auth A]		IPR018773Methyltransferase regulatory domain, predictedDomain