5DFW
CRYSTAL STRUCTURE OF HUMAN CD81 LARGE EXTRACELLULAR LOOP IN COMPLEX WITH SINGLE CHAIN FV FRAGMENT K13
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5dfwa1 | All alpha proteins | Tetraspanin | Tetraspanin | Tetraspanin | automated matches | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d5dfwa2 | Artifacts | Tags | Tags | Tags | C-terminal Tags | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth H] | d5dfwh1 | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | automated matches | automated matches | House Mouse (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Tetraspanin | 8039070 | 3001736 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e5dfwA1 | A: few secondary structure elements | X: Tetraspanin extracellular domain (From Topology) | H: Tetraspanin extracellular domain (From Topology) | T: Tetraspanin extracellular domain | F: F_UNCLASSIFIED | ECOD (1.6) |
B [auth H] | PF07686 | e5dfwH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1450.10 | Mainly Alpha | Orthogonal Bundle | Cd81 Antigen, Extracellular Domain | Chain: A | CATH (4.3.0) |
B [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
B [auth H] | FV K13 | SCFV-HEAVY-KAPPA | Mus musculus (house mouse) | IGHV14-3*02, IGHJ2*01, IGKV12-46*01, IGKJ1*01 | V-DOMAIN VH, V-DOMAIN V-KAPPA | IG | SCFV-HEAVY-KAPPA | IMGT (202416-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00335 | Tetraspanin family (Tetraspanin) | Tetraspanin family | - | Family | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008952 | Tetraspanin, EC2 domain superfamily | Homologous Superfamily | |
IPR000301 | Tetraspanin, animals | Family | |
IPR018503 | Tetraspanin, conserved site | Conserved Site | |
IPR018499 | Tetraspanin/Peripherin | Family |