5DCK
Crystal Structure of FIV Capsid C-Terminal Domain
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5dcka1 | All alpha proteins | Acyl carrier protein-like | Retrovirus capsid dimerization domain-like | automated matches | automated matches | FIV (Feline immunodeficiency virus (isolate Petaluma) ) [TaxId: 11674 ], | SCOPe (2.08) |
A | d5dcka2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | FIV (Feline immunodeficiency virus (isolate Petaluma) ) [TaxId: 11674 ], | SCOPe (2.08) |
B | d5dckb1 | All alpha proteins | Acyl carrier protein-like | Retrovirus capsid dimerization domain-like | automated matches | automated matches | FIV (Feline immunodeficiency virus (isolate Petaluma) ) [TaxId: 11674 ], | SCOPe (2.08) |
B | d5dckb2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | FIV (Feline immunodeficiency virus (isolate Petaluma) ) [TaxId: 11674 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Retrovirus capsid dimerization domain-like | 8077068 | 3001819 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Retrovirus capsid protein C-terminal domain | 8077067 | 4000865 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Retrovirus capsid dimerization domain-like | 8077068 | 3001819 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF19317 | e5dckA1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
B | PF19317 | e5dckB1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF19317 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.1200.30 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
B | 1.10.1200.30 | Mainly Alpha | Orthogonal Bundle | Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19317 | Gag protein p24 C-terminal domain (Gag_p24_C) | Gag protein p24 C-terminal domain | p24 forms inner protein layer of the nucleocapsid. ELISA tests for p24 is the most commonly used method to demonstrate virus replication both in vivo and in vitro. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Capsid C-Terminal Domain |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045345 | Retroviral nucleocapsid Gag protein p24, C-terminal domain | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR012344 | Matrix protein, lentiviral and alpha-retroviral, N-terminal | Homologous Superfamily | |
IPR008916 | Retrovirus capsid, C-terminal | Homologous Superfamily |