5DA9
ATP-gamma-S bound Rad50 from Chaetomium thermophilum in complex with the Rad50-binding domain of Mre11
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13476 | e5da9A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13476 | ECOD (1.6) |
B | PF13476 | e5da9B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13476 | ECOD (1.6) |
C | PF04152 | e5da9C1 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: PF04152 | ECOD (1.6) |
D | PF04152 | e5da9D1 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: PF04152 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13476 | AAA domain (AAA_23) | AAA domain | - | Domain | |
PF04152 | Mre11 DNA-binding presumed domain (Mre11_DNA_bind) | Mre11 DNA-binding presumed domain | The Mre11 complex is a multi-subunit nuclease that is composed of Mre11, Rad50 and Nbs1/Xrs2, and is involved in checkpoint signalling and DNA replication [1]. Mre11 has an intrinsic DNA-binding activity that is stimulated by Rad50 on its own or i ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004584 | DNA repair protein Rad50, eukaryotes | Family | |
IPR038729 | Rad50/SbcC-type AAA domain | Domain | |
IPR000219 | Dbl homology (DH) domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain | |
IPR007281 | Mre11, DNA-binding | Domain | |
IPR038487 | Mre11, capping domain | Homologous Superfamily | |
IPR041796 | Mre11 nuclease, N-terminal metallophosphatase domain | Domain | |
IPR003701 | DNA double-strand break repair protein Mre11 | Family | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily |