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Crystal Structure of the N-terminal domain of Moloney murine leukemia virus integrase, Northeast Structural Genomics Consortium Target OR3 External Resource: Annotation Domain Annotation: SCOP2 Classification SCOP2 Database Homepage Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) A SCOP2B Superfamily N-terminal Zn binding domain of HIV integrase-like 8091479 3001203 SCOP2B (2022-06-29) B SCOP2 Family N-terminal Zn-binding domain of M-MuLV integrase 8046049 4004842 SCOP2 (2022-06-29) B SCOP2 Superfamily N-terminal Zn binding domain of HIV integrase-like 8091479 3001203 SCOP2 (2022-06-29) C SCOP2B Superfamily N-terminal Zn binding domain of HIV integrase-like 8091479 3001203 SCOP2B (2022-06-29) D SCOP2B Superfamily N-terminal Zn binding domain of HIV integrase-like 8091479 3001203 SCOP2B (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) A PF16721 e4nzgA1 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF16721 ECOD (1.6) B PF16721 e4nzgB1 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF16721 ECOD (1.6) C PF16721 e4nzgC1 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF16721 ECOD (1.6) D PF16721 e4nzgD1 A: alpha arrays X: HTH H: HTH T: tri-helical F: PF16721 ECOD (1.6)
Chains Accession Name Description Comments Source PF16721 Zinc-finger like, probable DNA-binding (zf-H3C2) Zinc-finger like, probable DNA-binding This is a family of probably DNA-binding zinc-fingers found on Gag-Pol polyproteins from mouse retroviruses. Added to clan to resolve overlaps with zf-H2C2, but neither are true members. Domain
Chains Polymer Molecular Function Biological Process Cellular Component Integrase p46
Chains Accession Name Type IPR036397 Ribonuclease H superfamily Homologous Superfamily IPR040643 Murine leukemia virus integrase, C-terminal Domain IPR043128 Reverse transcriptase/Diguanylate cyclase domain Homologous Superfamily IPR001995 Peptidase A2A, retrovirus, catalytic Domain IPR001878 Zinc finger, CCHC-type Domain IPR008919 Retrovirus capsid, N-terminal Homologous Superfamily IPR010999 Retroviral matrix protein Homologous Superfamily IPR021109 Aspartic peptidase domain superfamily Homologous Superfamily IPR002079 Gag polyprotein, inner coat protein p12 Domain IPR001969 Aspartic peptidase, active site Active Site IPR012337 Ribonuclease H-like superfamily Homologous Superfamily IPR018061 Retropepsins Domain IPR002156 Ribonuclease H domain Domain IPR036875 Zinc finger, CCHC-type superfamily Homologous Superfamily IPR000840 Gamma-retroviral matrix protein Domain IPR001584 Integrase, catalytic core Domain IPR041577 Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain Domain IPR043502 DNA/RNA polymerase superfamily Homologous Superfamily IPR000477 Reverse transcriptase domain Domain IPR036946 Gamma-retroviral matrix domain superfamily Homologous Superfamily IPR039464 Gag-Pol polyprotein, Zinc-finger like domain Domain IPR003036 Core shell protein Gag P30 Domain