4MX8
Crystal Structure of TroA-like Periplasmic Binding Protein Peripla_BP_2 from Xylanimonas cellulosilytica
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2B (2022-06-29) |
C | SCOP2 Family | TM0189-like | 8084595 | 4003293 | SCOP2 (2022-06-29) |
C | SCOP2 Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Helical backbone metal receptor | 8084596 | 3001679 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | F_UNCLASSIFIED | e4mx8A1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
A | PF01497 | e4mx8A2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
B | F_UNCLASSIFIED | e4mx8B1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF01497 | e4mx8B2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
C | F_UNCLASSIFIED | e4mx8C1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF01497 | e4mx8C2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
D | F_UNCLASSIFIED | e4mx8D1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF01497 | e4mx8D2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
E | F_UNCLASSIFIED | e4mx8E2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E | PF01497 | e4mx8E1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
F | F_UNCLASSIFIED | e4mx8F2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: F_UNCLASSIFIED | ECOD (1.6) |
F | PF01497 | e4mx8F1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Chelatase-like | F: PF01497 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
B | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
C | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
D | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
E | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
F | 3.40.50.1980 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Nitrogenase molybdenum iron protein domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01497 | Periplasmic binding protein (Peripla_BP_2) | Periplasmic binding protein | This is sensor domain found in bacterial periplasmic binding proteins, several of which are involved in iron and cobalamin transport [1,2,3]. Among its ligands are siderophores bacillibactin, enterobactin and iron(III)-hydroxamates (Matilla et. al., ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Periplasmic binding protein | - | - |