Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyNup188-like8044975 4004233 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyScaffolding nucleoporins8053963 3002255 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF07575e4kf7A3 A: beta barrelsX: SH3H: SH3T: SH3F: EUF07575ECOD (1.6)
ANup188e4kf7A1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Nup188ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF10487Nucleoporin Nup188, N-terminal (Nup188_N)Nucleoporin Nup188, N-terminal- Repeat
PF21093Nucleoporin Nup188, N-terminal subdomain III (Nup188_N-subdom_III)Nucleoporin Nup188, N-terminal subdomain III- Repeat
PF21094Nup188 SH3-like domain (Nup188_SH3-like)Nup188 SH3-like domainNup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically loca ...Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [3]. This protein folds into an extended stack of helices where the N-terminal forms a closed ring (subdivided into subdomains I-III in [2]) and the C-terminal forms a more regular, superhelical structure [2]. This entry represents a beta-stranded SH3-like domain inserted in subdomain III from Nup188 N-terminal region, which is a circular permutation from canonical SH3 domain [2].
Domain