4JW0
Structure of Gloeobacter violaceus CcmL
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d4jw0b_ | All beta proteins | OB-fold | EutN/CcmL-like | EutN/CcmL-like | automated matches | (Gloeobacter violaceus PCC 7421 ) [TaxId: 251221 ], | SCOPe (2.08) |
D | d4jw0d_ | All beta proteins | OB-fold | EutN/CcmL-like | EutN/CcmL-like | automated matches | (Gloeobacter violaceus PCC 7421 ) [TaxId: 251221 ], | SCOPe (2.08) |
E | d4jw0e_ | All beta proteins | OB-fold | EutN/CcmL-like | EutN/CcmL-like | automated matches | (Gloeobacter violaceus PCC 7421 ) [TaxId: 251221 ], | SCOPe (2.08) |
B [auth A] | d4jw0a_ | All beta proteins | OB-fold | EutN/CcmL-like | EutN/CcmL-like | automated matches | (Gloeobacter violaceus PCC 7421 ) [TaxId: 251221 ], | SCOPe (2.08) |
C | d4jw0c_ | All beta proteins | OB-fold | EutN/CcmL-like | EutN/CcmL-like | automated matches | (Gloeobacter violaceus PCC 7421 ) [TaxId: 251221 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | EutN/CcmL-like | 8067764 | 3000362 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EutN/CcmL-like | 8067764 | 3000362 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | EutN/CcmL-like | 8067764 | 3000362 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2 Family | EutN/CcmL-like | 8067763 | 4001780 | SCOP2 (2022-06-29) |
B [auth A] | SCOP2 Superfamily | EutN/CcmL-like | 8067764 | 3000362 | SCOP2 (2022-06-29) |
C | SCOP2B Superfamily | EutN/CcmL-like | 8067764 | 3000362 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | PF03319 | e4jw0B1 | A: beta barrels | X: OB-fold | H: EutN/CcmL-like (From Topology) | T: EutN/CcmL-like | F: PF03319 | ECOD (1.6) |
D | PF03319 | e4jw0D1 | A: beta barrels | X: OB-fold | H: EutN/CcmL-like (From Topology) | T: EutN/CcmL-like | F: PF03319 | ECOD (1.6) |
E | PF03319 | e4jw0E1 | A: beta barrels | X: OB-fold | H: EutN/CcmL-like (From Topology) | T: EutN/CcmL-like | F: PF03319 | ECOD (1.6) |
B [auth A] | PF03319 | e4jw0A1 | A: beta barrels | X: OB-fold | H: EutN/CcmL-like (From Topology) | T: EutN/CcmL-like | F: PF03319 | ECOD (1.6) |
C | PF03319 | e4jw0C1 | A: beta barrels | X: OB-fold | H: EutN/CcmL-like (From Topology) | T: EutN/CcmL-like | F: PF03319 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth B] | 2.40.50.220 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | EutN/Ccml | CATH (4.3.0) |
D | 2.40.50.220 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | EutN/Ccml | CATH (4.3.0) |
E | 2.40.50.220 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | EutN/Ccml | CATH (4.3.0) |
B [auth A] | 2.40.50.220 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | EutN/Ccml | CATH (4.3.0) |
C | 2.40.50.220 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | EutN/Ccml | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth A], C, D, E | PF03319 | Ethanolamine utilisation protein EutN/carboxysome (EutN_CcmL) | Ethanolamine utilisation protein EutN/carboxysome | The crystal structure of EutN contains a central five-stranded beta-barrel, with an alpha-helix at the open end of this barrel (PDB:2HD3). The structure also contains three additional beta-strands, which help the formation of a tight hexamer, with a ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth B], B [auth A], C, D, E | Carbon dioxide concentrating mechanism protein |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B], B [auth A], C, D, E | IPR004992 | Ethanolamine utilization protein EutN/carboxysome shell vertex protein CcmL | Family |
A [auth B], B [auth A], C, D, E | IPR046387 | Carboxysome shell vertex protein CcmL | Family |
A [auth B], B [auth A], C, D, E | IPR036677 | EutN/Ccml superfamily | Homologous Superfamily |