4JCF
S268F Variant of JC Polyomavirus Major Capsid Protein VP1 in Complex with LSTc
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | Group I dsDNA viruses | 8081603 | 3000939 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Group I dsDNA viruses | 8081603 | 3000939 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Group I dsDNA viruses | 8081603 | 3000939 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8081603 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8081603 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | PF00718 | e4jcfC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
B [auth A] | PF00718 | e4jcfA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
C [auth B] | PF00718 | e4jcfB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
D | PF00718 | e4jcfD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
E | PF00718 | e4jcfE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00718 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth C] | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
B [auth A] | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
C [auth B] | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
D | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
E | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth A], C [auth B], D, E | PF00718 | Polyomavirus coat protein (Polyoma_coat) | Polyomavirus coat protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth A], C [auth B], D, E | IPR011222 | Double-stranded DNA virus, group I, capsid | Homologous Superfamily |
A [auth C], B [auth A], C [auth B], D, E | IPR000662 | Capsid protein VP1,Polyomavirus | Family |
A [auth C], B [auth A], C [auth B], D, E | IPR036931 | Polyomavirus capsid protein VP1 superfamily | Homologous Superfamily |