3VF0
Raver1 in complex with metavinculin L954 deletion mutant
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3vf0a_ | All alpha proteins | Four-helical up-and-down bundle | alpha-catenin/vinculin-like | alpha-catenin/vinculin | Vinculin | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | RNA-binding domain RBD | 8088420 | 3000110 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01044 | e3vf0A1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: alpha-catenin-related | T: alpha-catenin/vinculin | F: PF01044 | ECOD (1.6) |
B | PF00076 | e3vf0B2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.120.230 | Mainly Alpha | Up-down Bundle | Four Helix Bundle (Hemerythrin (Met), subunit A) | Alpha-catenin/vinculin-like | CATH (4.3.0) |
B | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01044 | Vinculin family (Vinculin) | Vinculin family | - | Family | |
PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR017997 | Vinculin | Family | |
IPR036723 | Alpha-catenin/vinculin-like superfamily | Homologous Superfamily | |
IPR006077 | Vinculin/alpha-catenin | Family | |
IPR000633 | Vinculin, conserved site | Conserved Site | |
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily | |
IPR034633 | Ribonucleoprotein PTB-binding 1, RNA recognition motif 1 | Domain | |
IPR000504 | RNA recognition motif domain | Domain | |
IPR035979 | RNA-binding domain superfamily | Homologous Superfamily | |
IPR034635 | Ribonucleoprotein PTB-binding 1, RNA recognition motif 3 | Domain |