3V8V
Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli, SAM binding
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22020 | e3v8vA4 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: PF22020 | ECOD (1.6) |
A | PF02926 | e3v8vA3 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: PF02926 | ECOD (1.6) |
A | PF01170 | e3v8vA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF01170 | ECOD (1.6) |
A | PF10672 | e3v8vA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF10672 | ECOD (1.6) |
B | PF22020 | e3v8vB3 | A: a+b two layers | X: Alpha-beta plaits | H: Ferredoxin-like domain in ThiI (From Topology) | T: Ferredoxin-like domain in ThiI | F: PF22020 | ECOD (1.6) |
B | PF02926 | e3v8vB2 | A: a+b two layers | X: THUMP domain-like (From Topology) | H: THUMP domain-like (From Topology) | T: THUMP domain-like | F: PF02926 | ECOD (1.6) |
B | PF01170 | e3v8vB4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF01170 | ECOD (1.6) |
B | PF10672 | e3v8vB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF10672 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.2130.30 | Alpha Beta | 2-Layer Sandwich | VC0802-like | CATH (4.3.0) | |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
A | 3.30.750.80 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | RNA methyltransferase domain (HRMD) like | CATH (4.3.0) |
B | 3.30.2130.30 | Alpha Beta | 2-Layer Sandwich | VC0802-like | CATH (4.3.0) | |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 3.30.750.80 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | RNA methyltransferase domain (HRMD) like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01170 | Putative RNA methylase family UPF0020 (UPF0020) | Putative RNA methylase family UPF0020 | This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [1]. | Domain | |
PF10672 | S-adenosylmethionine-dependent methyltransferase (Methyltrans_SAM) | S-adenosylmethionine-dependent methyltransferase | - | Family | |
PF02926 | THUMP domain (THUMP) | THUMP domain | The THUMP domain is named after after thiouridine synthases, methylases and PSUSs [1]. The THUMP domain consists of about 110 amino acid residues. The structure of ThiI reveals that the THUMP has a fold unlike that of previously characterised RNA-bi ... | Domain |