3S6Z
Structure of reovirus attachment protein sigma1 in complex with alpha-2,8-disialyllactose
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Virus attachment protein globular domain | 8038299 | 3001376 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Fibre shaft of virus attachment proteins | 8038300 | 3001872 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Reo_sigma1_C | e3s6zA1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
A | EUF07859,Reo_sigma1_N_1 | e3s6zA3 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: EUF07859,Reo_sigma1_N_1 | ECOD (1.6) |
A | UNK_F_TYPE | e3s6zA2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: UNK_F_TYPE | ECOD (1.6) |
B | Reo_sigma1_C | e3s6zB1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
B | EUF07859,Reo_sigma1_N_1 | e3s6zB3 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: EUF07859,Reo_sigma1_N_1 | ECOD (1.6) |
B | UNK_F_TYPE | e3s6zB2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: UNK_F_TYPE | ECOD (1.6) |
C | Reo_sigma1_C | e3s6zC1 | A: beta sandwiches | X: Domain in virus attachment proteins (From Topology) | H: Domain in virus attachment proteins (From Topology) | T: Domain in virus attachment proteins | F: Reo_sigma1_C | ECOD (1.6) |
C | EUF07859,Reo_sigma1_N_1 | e3s6zC3 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: EUF07859,Reo_sigma1_N_1 | ECOD (1.6) |
C | UNK_F_TYPE | e3s6zC2 | A: beta duplicates or obligate multimers | X: Triple beta-spiral (From Topology) | H: Triple beta-spiral (From Topology) | T: Triple beta-spiral | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.90.20 | Mainly Beta | Sandwich | Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) | Virus attachment protein , globular domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01664 | Reovirus viral attachment protein sigma 1 (Reo_sigma1) | Reovirus viral attachment protein sigma 1 | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Outer capsid protein sigma-1 | - |
|
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009013 | Attachment protein shaft domain superfamily | Homologous Superfamily | |
IPR008982 | Adenovirus pIV-like, attachment domain | Homologous Superfamily | |
IPR002592 | Viral attachment sigma 1, reoviral | Family |