3QG5
The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF13476,PF13558 | e3qg5A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13476,PF13558 | ECOD (1.6) |
B | PF13476,PF13558 | e3qg5B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13476,PF13558 | ECOD (1.6) |
C | PF22161 | e3qg5C3 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: PF22161 | ECOD (1.6) |
C | PF00149 | e3qg5C1 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF00149 | ECOD (1.6) |
C | PF22155 | e3qg5C2 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: PF22155 | ECOD (1.6) |
D | PF22161 | e3qg5D3 | A: alpha bundles | X: Rad50-binding domain of Mre11 (From Topology) | H: Rad50-binding domain of Mre11 (From Topology) | T: Rad50-binding domain of Mre11 | F: PF22161 | ECOD (1.6) |
D | PF00149 | e3qg5D2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: PF00149 | ECOD (1.6) |
D | PF22155 | e3qg5D1 | A: a+b four layers | X: Mre11 nuclease C-terminal domain (From Topology) | H: Mre11 nuclease C-terminal domain (From Topology) | T: Mre11 nuclease C-terminal domain | F: PF22155 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.287.660 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
B | 1.10.287.660 | Mainly Alpha | Orthogonal Bundle | Helix Hairpins | Helix hairpin bin | CATH (4.3.0) |
C | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
C | 3.30.160.210 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | DNA double-strand break repair nuclease | CATH (4.3.0) |
D | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (4.3.0) |
D | 3.30.160.210 | Alpha Beta | 2-Layer Sandwich | Double Stranded RNA Binding Domain | DNA double-strand break repair nuclease | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13558 | SbcC/RAD50-like, Walker B motif (SbcC_Walker_B) | SbcC/RAD50-like, Walker B motif | This entry represents the Walker B domain of RAD50 from eukaryotes and the prokaryotic homologue SbcCD complex subunit C. RAD50-ATPase forms a complex with Mre11-nuclease that detects and processes diverse and obstructed DNA ends. This domain is sepa ... | Domain | |
PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013134 | RAD50, zinc hook | Domain | |
IPR038729 | Rad50/SbcC-type AAA domain | Domain | |
IPR029012 | Helix hairpin bin domain superfamily | Homologous Superfamily | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain | |
IPR004593 | Nuclease SbcCD subunit D | Family | |
IPR041796 | Mre11 nuclease, N-terminal metallophosphatase domain | Domain | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily |