3LML

Crystal Structure of the sheath tail protein Lin1278 from Listeria innocua, Northeast Structural Genomics Consortium Target LkR115

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF17481	e3lmlA11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
A	PF17482	e3lmlA10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
A	PF04984,PF22671	e3lmlA12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)
B	PF17481	e3lmlB11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
B	PF17482	e3lmlB10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
B	PF04984,PF22671	e3lmlB12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)
C	PF17481	e3lmlC11	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
C	PF17482	e3lmlC10	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
C	PF04984,PF22671	e3lmlC12	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)
D	PF17481	e3lmlD3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
D	PF17482	e3lmlD1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
D	PF04984,PF22671	e3lmlD2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)
E	PF17481	e3lmlE3	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
E	PF17482	e3lmlE1	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
E	PF04984,PF22671	e3lmlE2	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)
F	PF17481	e3lmlF5	A: beta sandwiches	X: Tail sheath protein beta-sandwich domain (From Topology)	H: Tail sheath protein beta-sandwich domain (From Topology)	T: Tail sheath protein beta-sandwich domain	F: PF17481	ECOD (1.6)
F	PF17482	e3lmlF4	A: a+b duplicates or obligate multimers	X: Creatinase/aminopeptidase-like	H: gpW/gp25-like (From Topology)	T: gpW/gp25-like	F: PF17482	ECOD (1.6)
F	PF04984,PF22671	e3lmlF6	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Domain III of tail sheath protein Gp18 (From Topology)	T: Domain III of tail sheath protein Gp18	F: PF04984,PF22671	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
C	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
C	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
D	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
D	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
E	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
E	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
F	3.10.450.690	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
F	3.30.1490.450	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
F	2.60.40.4290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain
A, B, C, D, E A, B, C, D, E, F	PF17481	Phage tail sheath protein beta-sandwich domain (Phage_sheath_1N)	Phage tail sheath protein beta-sandwich domain	This entry represents the N-terminal beta sandwich domain found in a variety of phage tail sheath proteins.	Domain
A, B, C, D, E A, B, C, D, E, F	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR035326	Phage tail sheath protein, beta-sandwich domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR020287	Tail sheath protein, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR035089	Tail sheath protein, subtilisin-like domain	Domain

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.