Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3l7za1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Ad3l7za2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Dd3l7zd1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Dd3l7zd2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Gd3l7zg1 Alpha and beta proteins (a+b) Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribonuclease PH domain 1-like automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Gd3l7zg2 Alpha and beta proteins (a+b) Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Cd3l7zc2 All beta proteins OB-fold Nucleic acid-binding proteins DNA replication initiator (cdc21/cdc54) N-terminal domain DNA replication initiator (cdc21/cdc54) N-terminal domain (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Cd3l7zc1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Cd3l7zc3 Alpha and beta proteins (a+b) Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Id3l7zi2 All beta proteins OB-fold Nucleic acid-binding proteins DNA replication initiator (cdc21/cdc54) N-terminal domain DNA replication initiator (cdc21/cdc54) N-terminal domain (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Id3l7zi1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)
Id3l7zi3 Alpha and beta proteins (a+b) Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) automated matches automated matches (Saccharolobus solfataricus ) [TaxId: 2287 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034673 3000100 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRibonuclease PH domain 2-like8034675 3000346 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034673 3000100 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRibonuclease PH domain 2-like8034675 3000346 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibonuclease PH domain 2-like8034675 3000346 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034673 3000100 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034677 3000100 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRibonuclease PH domain 2-like8034679 3000346 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034677 3000100 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyRibonuclease PH domain 2-like8034679 3000346 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibosomal protein S5 domain 2-like8034677 3000100 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyRibonuclease PH domain 2-like8034679 3000346 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyNucleic acid-binding proteins8034682 3000135 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I)8034684 3001023 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal L27 protein-like8034683 3000539 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L27 protein-like8034683 3000539 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyNucleic acid-binding proteins8034682 3000135 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I)8034684 3001023 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal L27 protein-like8034683 3000539 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyNucleic acid-binding proteins8034682 3000135 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I)8034684 3001023 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF01138e3l7zA3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
APF03725e3l7zA4 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
DPF01138e3l7zD3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
DPF03725e3l7zD4 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
GPF01138e3l7zG3 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
GPF03725e3l7zG4 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
BPF01138e3l7zB2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
BPF03725e3l7zB1 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
EPF01138e3l7zE2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
EPF03725e3l7zE1 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
HPF01138e3l7zH2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF01138ECOD (1.6)
HPF03725e3l7zH1 A: a+b two layersX: Ribonuclease PH domain 2-likeH: Ribonuclease PH domain 2 (From Topology)T: Ribonuclease PH domain 2F: PF03725ECOD (1.6)
CF_UNCLASSIFIEDe3l7zC4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
CPF15985e3l7zC2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF15985ECOD (1.6)
CPF22625e3l7zC5 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF22625ECOD (1.6)
FF_UNCLASSIFIEDe3l7zF1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
FPF15985e3l7zF5 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF15985ECOD (1.6)
FPF22625e3l7zF4 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF22625ECOD (1.6)
IF_UNCLASSIFIEDe3l7zI1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: F_UNCLASSIFIEDECOD (1.6)
IPF15985e3l7zI2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Eukaryotic type KH-domain (KH-domain type I)F: PF15985ECOD (1.6)
IPF22625e3l7zI3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF22625ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
D3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
G3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
B3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
E3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
H3.30.230.70 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5 domain 2CATH (4.3.0)
C2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
C2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
C3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
F2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
F2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
F3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)
I2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
I2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
I3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8 Chain: A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D, G
PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
A, D, G
PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
B, E, H
PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
B, E, H
PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D, G
Probable exosome complex exonuclease 2-
B, E, H
Probable exosome complex exonuclease 1
C, F, I
Probable exosome complex RNA-binding protein 1