3JXT
Crystal structure of the third PDZ domain of SAP-102 in complex with a fluorogenic peptide-based ligand
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | PF00595 | e3jxtB1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
A | PF00595 | e3jxtA1 | A: beta barrels | X: PDZ domain (From Topology) | H: PDZ domain (From Topology) | T: PDZ domain | F: PF00595 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
A | 2.30.42.10 | Mainly Beta | Roll | Pdz3 Domain | PDZ domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00595 | PDZ domain (PDZ) | PDZ domain | PDZ domains are found in diverse signaling proteins. | Domain | |
PF10600 | PDZ-associated domain of NMDA receptors (PDZ_assoc) | PDZ-associated domain of NMDA receptors | This domain is found in higher eukaryotes between the second and third PDZ domains, Pfam:PF00595, of glutamate receptor like proteins. Its exact function is not known. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008145 | Guanylate kinase/L-type calcium channel beta subunit | Domain | |
IPR036028 | SH3-like domain superfamily | Homologous Superfamily | |
IPR020590 | Guanylate kinase, conserved site | Conserved Site | |
IPR019583 | Disks large homolog 1-4, PDZ-associated domain | Domain | |
IPR016313 | Disks large 1-like | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR036034 | PDZ superfamily | Homologous Superfamily | |
IPR001452 | SH3 domain | Domain | |
IPR019590 | Disks large homologue 1, N-terminal PEST domain | Domain | |
IPR035763 | Disks Large homologue 3, SH3 domain | Domain | |
IPR008144 | Guanylate kinase-like domain | Domain | |
IPR001478 | PDZ domain | Domain | |
IPR004031 | PMP-22/EMP/MP20/Claudin | Family | |
IPR005422 | Voltage-dependent calcium channel, gamma-2 subunit | Family | |
IPR008368 | Voltage-dependent calcium channel, gamma subunit | Family |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
4DB | ||
ACE | AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354 :  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359 | :