3J7R

Structure of the translating mammalian ribosome-Sec61 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
G [auth D]SCOP2 FamilyRibosomal protein L5e and archael L18-like8049682 4006591 SCOP2 (2022-06-29)
G [auth D]SCOP2 SuperfamilyTranslational machinery components8052879 3000571 SCOP2 (2022-06-29)
L [auth I]SCOP2B SuperfamilyRibosomal protein L16p/L10e8099256 3000884 SCOP2B (2022-06-29)
M [auth J]SCOP2B SuperfamilyRL5-like8073896 3001709 SCOP2B (2022-06-29)
P [auth N]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8096618 3000210 SCOP2B (2022-06-29)
R [auth P]SCOP2 FamilyRibosomal protein L228096623 4001212 SCOP2 (2022-06-29)
R [auth P]SCOP2 SuperfamilyRibosomal protein L228096624 3001078 SCOP2 (2022-06-29)
S [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8095972 3001045 SCOP2B (2022-06-29)
W [auth U]SCOP2B Superfamily60S Ribosomal protein L22e8053061 3002158 SCOP2B (2022-06-29)
AA [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096888 3000334 SCOP2B (2022-06-29)
CA [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8096880 3001045 SCOP2B (2022-06-29)
DA [auth b]SCOP2 FamilyRibosomal protein L29e8049523 4006531 SCOP2 (2022-06-29)
DA [auth b]SCOP2 SuperfamilyRibosomal protein L29e8053041 3002157 SCOP2 (2022-06-29)
EA [auth c]SCOP2B SuperfamilyL30e-like8096886 3001739 SCOP2B (2022-06-29)
MA [auth k]SCOP2 FamilyRibosomal L38e protein-like8049535 4006532 SCOP2 (2022-06-29)
MA [auth k]SCOP2 SuperfamilyRibosomal L38e protein-like8053571 3002206 SCOP2 (2022-06-29)
NA [auth l]SCOP2B SuperfamilyRibosomal protein L39e8098012 3001756 SCOP2B (2022-06-29)
OA [auth m]SCOP2 FamilyRibosomal protein L40e8101562 4002847 SCOP2 (2022-06-29)
OA [auth m]SCOP2 SuperfamilyZn-binding ribosomal proteins8101563 3001320 SCOP2 (2022-06-29)
YA [auth SA]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8052794 3001397 SCOP2B (2022-06-29)
ZA [auth SB]SCOP2B SuperfamilyRibosomal S3Ae-like8053206 3002166 SCOP2B (2022-06-29)
CB [auth SE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8052775 3000334 SCOP2B (2022-06-29)
CB [auth SE]SCOP2B SuperfamilyAlpha-L RNA-binding motif8052773 3001473 SCOP2B (2022-06-29)
CB [auth SE]SCOP2B SuperfamilyNucleic acid-binding proteins8052774 3000135 SCOP2B (2022-06-29)
KB [auth SM]SCOP2 FamilyL30e/L7ae ribosomal proteins8094792 4001513 SCOP2 (2022-06-29)
KB [auth SM]SCOP2 SuperfamilyL30e-like8094793 3001739 SCOP2 (2022-06-29)
OB [auth SQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8099258 3000100 SCOP2B (2022-06-29)
RB [auth ST]SCOP2 FamilyRps19E-like8096877 4000222 SCOP2 (2022-06-29)
RB [auth ST]SCOP2 SuperfamilyWinged helix DNA-binding domain8096878 3000034 SCOP2 (2022-06-29)
SB [auth SU]SCOP2 FamilyRibosomal protein S108097027 4001240 SCOP2 (2022-06-29)
SB [auth SU]SCOP2 SuperfamilyRibosomal protein S108097028 3001336 SCOP2 (2022-06-29)
TB [auth SV]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053134 3000068 SCOP2B (2022-06-29)
YB [auth Sa]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8053144 3000068 SCOP2B (2022-06-29)
BC [auth Sd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052596 3000068 SCOP2B (2022-06-29)
EC [auth Sg]SCOP2 FamilyWD40-repeat8098887 4002744 SCOP2 (2022-06-29)
EC [auth Sg]SCOP2 SuperfamilyWD40 repeat-like8098888 3001694 SCOP2 (2022-06-29)
N [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like8096882 3002162 SCOP2B (2022-06-29)
BA [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8053051 3000334 SCOP2B (2022-06-29)
GA [auth e]SCOP2B SuperfamilyRibosomal protein L32e8102190 3000982 SCOP2B (2022-06-29)
IA [auth g]SCOP2 FamilyRibosomal protein L34e-like8048727 4006193 SCOP2 (2022-06-29)
IA [auth g]SCOP2 SuperfamilyRibosomal protein L34e-like8053544 3002203 SCOP2 (2022-06-29)
UA [auth 1]SCOP2 FamilySecY-like8096883 4001751 SCOP2 (2022-06-29)
UA [auth 1]SCOP2 SuperfamilySecY-like8096884 3000333 SCOP2 (2022-06-29)
DB [auth SF]SCOP2B SuperfamilyRibosomal protein S78066005 3000799 SCOP2B (2022-06-29)
QB [auth SS]SCOP2 FamilyRibosomal protein S138101556 4000260 SCOP2 (2022-06-29)
QB [auth SS]SCOP2 SuperfamilyS13-like H2TH domain8101557 3000053 SCOP2 (2022-06-29)
AC [auth Sc]SCOP2 FamilyCold shock DNA-binding domain-like8099837 4001909 SCOP2 (2022-06-29)
AC [auth Sc]SCOP2 SuperfamilyNucleic acid-binding proteins8099838 3000135 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth A]PF00181e3j7rA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth A]PF03947e3j7rA2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
E [auth B]PF00297e3j7rB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
F [auth C]PF00573e3j7rC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
F [auth C]PF14374e3j7rC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
G [auth D]PF14204,PF17144e3j7rD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
H [auth E]PF01159,PF03868e3j7rE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
I [auth F]PF00327,PF08079e3j7rF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
J [auth G]PF01248e3j7rG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
K [auth H]PF00347e3j7rH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
L [auth I]PF00252e3j7rI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
M [auth J]PF00281,PF00673e3j7rJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
P [auth N]PF00827e3j7rN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
Q [auth O]PF00572e3j7rO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
R [auth P]PF00237e3j7rP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
S [auth Q]PF17135e3j7rQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
T [auth R]PF01280e3j7rR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
T [auth R]PF01280e3j7rR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
U [auth S]F_UNCLASSIFIEDe3j7rS2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
U [auth S]PF01775e3j7rS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
V [auth T]PF01157e3j7rT1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
W [auth U]PF01776e3j7rU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
Z [auth X]PF00276,PF03939e3j7rX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
AA [auth Y]PF16906e3j7rY1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
CA [auth a]PF00828e3j7ra1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
DA [auth b]PF01779e3j7rb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
EA [auth c]PF01248e3j7rc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
FA [auth d]PF01198e3j7rd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
HA [auth f]PF01247e3j7rf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
KA [auth i]PF01158e3j7ri1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
LA [auth j]PF01907e3j7rj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
MA [auth k]PF01781e3j7rk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
NA [auth l]PF00832e3j7rl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
OA [auth m]PF01020e3j7rm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
QA [auth o]PF00935e3j7ro1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
RA [auth p]PF01780e3j7rp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
SA [auth r]PF01778e3j7rr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
TA [auth z]PF00687e3j7rz2 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
TA [auth z]PF00687e3j7rz1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
VA [auth 2]PF00584e3j7r21 A: extended segmentsX: Preprotein translocase SecE subunit (From Topology)H: Preprotein translocase SecE subunit (From Topology)T: Preprotein translocase SecE subunitF: PF00584ECOD (1.6)
YA [auth SA]PF00318e3j7rSA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318ECOD (1.6)
ZA [auth SB]PF01015e3j7rSB2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
ZA [auth SB]PF01015e3j7rSB1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
AB [auth SC]PF03719e3j7rSC2 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
AB [auth SC]PF00333e3j7rSC4 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
AB [auth SC]PF00333e3j7rSC3 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
BB [auth SD]PF00189e3j7rSD1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
BB [auth SD]PF07650e3j7rSD2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
CB [auth SE]PF00900e3j7rSE3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
CB [auth SE]PF00467,PF16121e3j7rSE2 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
CB [auth SE]PF00900,PF01479,PF08071e3j7rSE1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
EB [auth SG]PF01092e3j7rSG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
FB [auth SH]PF01251e3j7rSH2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
GB [auth SI]PF01201e3j7rSI1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
HB [auth SJ]PF00163,PF01479e3j7rSJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
IB [auth SK]PF03501e3j7rSK1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
JB [auth SL]PF00366,PF16205e3j7rSL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
KB [auth SM]PF01248e3j7rSM1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
LB [auth SN]PF08069e3j7rSN2 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
LB [auth SN]PF00312e3j7rSN1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
MB [auth SO]PF00411e3j7rSO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
OB [auth SQ]PF00380e3j7rSQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
PB [auth SR]PF00833e3j7rSR1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
RB [auth ST]PF01090e3j7rST1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
SB [auth SU]PF00338e3j7rSU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
TB [auth SV]PF01249e3j7rSV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
UB [auth SW]PF00410e3j7rSW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
UB [auth SW]PF00410e3j7rSW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
VB [auth SX]PF00164e3j7rSX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
WB [auth SY]PF01282e3j7rSY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
YB [auth Sa]PF01283e3j7rSa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
ZB [auth Sb]PF01667e3j7rSb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
BC [auth Sd]PF00253e3j7rSd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
CC [auth Se]PF04758e3j7rSe1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
EC [auth Sg]PF00400e3j7rSg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
N [auth L]PF01294e3j7rL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
O [auth M]PF00467,PF01929e3j7rM1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
X [auth V]PF00238e3j7rV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
Y [auth W]PF01246e3j7rW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
BA [auth Z]PF00467,PF01777e3j7rZ1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
GA [auth e]PF01655e3j7re1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
IA [auth g]PF01199e3j7rg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
JA [auth h]PF00831e3j7rh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
UA [auth 1]PF00344,PF10559e3j7r11 A: alpha complex topologyX: Preprotein translocase SecY subunit (From Topology)H: Preprotein translocase SecY subunit (From Topology)T: Preprotein translocase SecY subunitF: PF00344,PF10559ECOD (1.6)
DB [auth SF]PF00177e3j7rSF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
NB [auth SP]PF00203e3j7rSP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
QB [auth SS]PF00416e3j7rSS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
XB [auth SZ]PF03297e3j7rSZ1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)
AC [auth Sc]PF01200e3j7rSc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
DC [auth Sf]PF01599e3j7rSf1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
F [auth C]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
F [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
G [auth D]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
G [auth D]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
H [auth E]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
H [auth E]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
J [auth G]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
K [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth I]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth J]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
M [auth J]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
P [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
R [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
S [auth Q]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
U [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
V [auth T]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
W [auth U]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
AA [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
AA [auth Y]PF00467KOW motif (KOW)KOW motif- Family
CA [auth a]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
DA [auth b]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
EA [auth c]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FA [auth d]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
MA [auth k]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
NA [auth l]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
OA [auth m]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
YA [auth SA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
YA [auth SA]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
ZA [auth SB]PF01015Ribosomal S3Ae family (Ribosomal_S3Ae)Ribosomal S3Ae family- Family
AB [auth SC]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
AB [auth SC]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
BB [auth SD]PF07650KH domain (KH_2)KH domain- Domain
BB [auth SD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
CB [auth SE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
CB [auth SE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
CB [auth SE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
CB [auth SE]PF00467KOW motif (KOW)KOW motif- Family
FB [auth SH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
KB [auth SM]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LB [auth SN]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
LB [auth SN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
OB [auth SQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
PB [auth SR]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
RB [auth ST]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
SB [auth SU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
TB [auth SV]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
VB [auth SX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
WB [auth SY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
YB [auth Sa]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
ZB [auth Sb]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
BC [auth Sd]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
EC [auth Sg]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
N [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
O [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Y [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
BA [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
BA [auth Z]PF00467KOW motif (KOW)KOW motif- Family
GA [auth e]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
IA [auth g]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
JA [auth h]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
DB [auth SF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
NB [auth SP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
QB [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
AC [auth Sc]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
DC [auth Sf]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 5]28S ribosomal RNA---
B [auth 7]5S ribosomal RNA---
D [auth A]Ribosomal protein uL2---
E [auth B]Ribosomal protein uL3---
F [auth C]Ribosomal protein uL4
G [auth D]Ribosomal protein uL18
H [auth E]Ribosomal protein eL6
I [auth F]Ribosomal protein uL30---
J [auth G]Ribosomal protein eL8
K [auth H]Ribosomal protein uL6
L [auth I]Ribosomal protein uL16
M [auth J]Ribosomal protein uL5
P [auth N]Ribosomal protein eL15
Q [auth O]Ribosomal protein uL13---
R [auth P]Ribosomal protein uL22
S [auth Q]Ribosomal protein eL18
T [auth R]Ribosomal protein eL19---
U [auth S]Ribosomal protein eL20
V [auth T]Ribosomal protein eL21
W [auth U]Ribosomal protein eL22
Z [auth X]Ribosomal protein uL23---
AA [auth Y]Ribosomal protein uL24
CA [auth a]Ribosomal protein uL15
DA [auth b]Ribosomal protein eL29
EA [auth c]Ribosomal protein eL30 -
FA [auth d]Ribosomal protein eL31
HA [auth f]Ribosomal protein eL33---
KA [auth i]Ribosomal protein eL36---
LA [auth j]Ribosomal protein eL37---
MA [auth k]Ribosomal protein eL38
NA [auth l]Ribosomal protein eL39
OA [auth m]Ribosomal protein eL40
PA [auth n]Ribosomal protein eL41---
QA [auth o]Ribosomal protein eL42---
RA [auth p]Ribosomal protein eL43---
SA [auth r]Ribosomal protein eL28---
TA [auth z]Ribosomal protein uL1---
VA [auth 2]Sec61 gamma subunit---
WA [auth 3]Sec61 beta subunit---
XA [auth S2]18S ribosomal RNA---
YA [auth SA]Ribosomal protein uS2
ZA [auth SB]Ribosomal protein eS1
AB [auth SC]Ribosomal protein uS5
BB [auth SD]Ribosomal protein uS3
CB [auth SE]Ribosomal protein eS4
EB [auth SG]Ribosomal protein eS6---
FB [auth SH]Ribosomal protein eS7
GB [auth SI]Ribosomal protein eS8---
HB [auth SJ]Ribosomal protein uS4---
IB [auth SK]Ribosomal protein eS10---
JB [auth SL]Ribosomal protein uS17---
KB [auth SM]Ribosomal protein eS12
LB [auth SN]Ribosomal protein uS15
MB [auth SO]Ribosomal protein uS11---
OB [auth SQ]Ribosomal protein uS9
PB [auth SR]Ribosomal protein eS17
RB [auth ST]Ribosomal protein eS19
SB [auth SU]Ribosomal protein uS10
TB [auth SV]Ribosomal protein eS21
UB [auth SW]Ribosomal protein uS8---
VB [auth SX]Ribosomal protein uS12
WB [auth SY]Ribosomal protein eS24
YB [auth Sa]Ribosomal protein eS26
ZB [auth Sb]Ribosomal protein eS27
BC [auth Sd]Ribosomal protein uS14
CC [auth Se]Ribosomal protein eS30---
EC [auth Sg]Ribosomal protein RACK1
GC [auth S5]A/P tRNA---
HC [auth S6]P/E tRNA---
N [auth L]Ribosomal protein eL13
O [auth M]Ribosomal protein eL14
X [auth V]Ribosomal protein uL14---
Y [auth W]Ribosomal protein eL24- -
BA [auth Z]Ribosomal protein eL27
C [auth 8]5.8S ribosomal RNA---
GA [auth e]Ribosomal protein eL32
IA [auth g]Ribosomal protein eL34
JA [auth h]Ribosomal protein uL29
UA [auth 1]Sec61 alpha subunit
DB [auth SF]Ribosomal protein uS7
NB [auth SP]Ribosomal protein uS19
QB [auth SS]Ribosomal protein uS13
XB [auth SZ]Ribosomal protein es25---
AC [auth Sc]Ribosomal protein eS28
DC [auth Sf]Ribosomal protein eS31
FC [auth S4]Messenger RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth C]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
F [auth C]IPR002136Large ribosomal subunit protein uL4Family
F [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
F [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
F [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
G [auth D]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
G [auth D]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
H [auth E]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
H [auth E]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
H [auth E]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
H [auth E]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
H [auth E]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
H [auth E]IPR000915Large ribosomal subunit protein eL6Family
J [auth G]IPR001921Large ribosomal subunit protein eL8Family
J [auth G]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
J [auth G]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
J [auth G]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
J [auth G]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
K [auth H]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth H]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth H]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth H]IPR000702Large ribosomal subunit protein uL6-likeFamily
L [auth I]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth I]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
L [auth I]IPR047873Large ribosomal subunit protein uL16Family
L [auth I]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
L [auth I]IPR016180Large ribosomal subunit protein uL16 domainDomain
M [auth J]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth J]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth J]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth J]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth J]IPR002132Large ribosomal subunit protein uL5Family
P [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
P [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
P [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
P [auth N]IPR000439Large ribosomal subunit protein eL15Family
R [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth P]IPR001063Large ribosomal subunit protein uL22Family
R [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
S [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
S [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
S [auth Q]IPR000039Large ribosomal subunit protein eL18Family
S [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth S]IPR028877Large ribosomal subunit protein eL20Family
U [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
U [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
V [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
V [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
V [auth T]IPR001147Large ribosomal subunit protein eL21Family
V [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
W [auth U]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
W [auth U]IPR002671Large ribosomal subunit protein eL22Family
AA [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
AA [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth Y]IPR005824KOWDomain
AA [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
CA [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
CA [auth a]IPR030878Large ribosomal subunit protein uL15Family
CA [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
CA [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
DA [auth b]IPR002673Large ribosomal subunit protein eL29Family
EA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
EA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EA [auth c]IPR000231Large ribosomal subunit protein eL30Family
EA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
EA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
FA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
FA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
FA [auth d]IPR000054Large ribosomal subunit protein eL31Family
MA [auth k]IPR002675Large ribosomal subunit protein eL38Family
MA [auth k]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
NA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
NA [auth l]IPR000077Large ribosomal subunit protein eL39Family
NA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
OA [auth m]IPR019954Ubiquitin conserved siteConserved Site
OA [auth m]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
OA [auth m]IPR000626Ubiquitin-like domainDomain
OA [auth m]IPR019956Ubiquitin domainDomain
OA [auth m]IPR001975Large ribosomal subunit protein eL40 domainDomain
OA [auth m]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
YA [auth SA]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
YA [auth SA]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
YA [auth SA]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
YA [auth SA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
YA [auth SA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
YA [auth SA]IPR001865Small ribosomal subunit protein uS2Family
YA [auth SA]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
ZA [auth SB]IPR001593Small ribosomal subunit protein eS1Family
ZA [auth SB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
AB [auth SC]IPR000851Small ribosomal subunit protein uS5Family
AB [auth SC]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
AB [auth SC]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
AB [auth SC]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
AB [auth SC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
AB [auth SC]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
AB [auth SC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
BB [auth SD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
BB [auth SD]IPR004044K Homology domain, type 2Domain
BB [auth SD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
BB [auth SD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
BB [auth SD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
BB [auth SD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
BB [auth SD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CB [auth SE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
CB [auth SE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
CB [auth SE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
CB [auth SE]IPR002942RNA-binding S4 domainDomain
CB [auth SE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
CB [auth SE]IPR000876Small ribosomal subunit protein eS4Family
CB [auth SE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CB [auth SE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
CB [auth SE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
CB [auth SE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
CB [auth SE]IPR005824KOWDomain
FB [auth SH]IPR000554Small ribosomal subunit protein eS7Family
FB [auth SH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
KB [auth SM]IPR000530Small ribosomal subunit protein eS12Family
KB [auth SM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth SM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
KB [auth SM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
LB [auth SN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
LB [auth SN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
LB [auth SN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
LB [auth SN]IPR000589Small ribosomal subunit protein uS15Family
OB [auth SQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
OB [auth SQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OB [auth SQ]IPR000754Small ribosomal subunit protein uS9Family
OB [auth SQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PB [auth SR]IPR001210Small ribosomal subunit protein eS17Family
PB [auth SR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
PB [auth SR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
RB [auth ST]IPR001266Small ribosomal subunit protein eS19Family
RB [auth ST]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
RB [auth ST]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
RB [auth ST]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
SB [auth SU]IPR001848Small ribosomal subunit protein uS10Family
SB [auth SU]IPR027486Small ribosomal subunit protein uS10 domainDomain
SB [auth SU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
SB [auth SU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
SB [auth SU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
TB [auth SV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
TB [auth SV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
TB [auth SV]IPR001931Small ribosomal subunit protein eS21Family
VB [auth SX]IPR006032Small ribosomal subunit protein uS12Family
VB [auth SX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
VB [auth SX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
WB [auth SY]IPR001976Small ribosomal subunit protein eS24Family
WB [auth SY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
WB [auth SY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
YB [auth Sa]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
YB [auth Sa]IPR000892Small ribosomal subunit protein eS26Family
YB [auth Sa]IPR047864Ribosomal protein eS26, conserved siteConserved Site
ZB [auth Sb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
ZB [auth Sb]IPR000592Small ribosomal subunit protein eS27Family
ZB [auth Sb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BC [auth Sd]IPR001209Small ribosomal subunit protein uS14Family
BC [auth Sd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
BC [auth Sd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
BC [auth Sd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
EC [auth Sg]IPR019775WD40 repeat, conserved siteConserved Site
EC [auth Sg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EC [auth Sg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EC [auth Sg]IPR020472G-protein beta WD-40 repeatRepeat
EC [auth Sg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
EC [auth Sg]IPR001680WD40 repeatRepeat
N [auth L]IPR001380Large ribosomal subunit protein eL13Family
N [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
O [auth M]IPR039660Large ribosomal subunit protein eL14Family
O [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
O [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
O [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth W]IPR011017TRASH domainDomain
Y [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
Y [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
Y [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
BA [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BA [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth Z]IPR001141Large ribosomal subunit protein eL27Family
BA [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BA [auth Z]IPR005824KOWDomain
BA [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
GA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
GA [auth e]IPR001515Large ribosomal subunit protein eL32Family
GA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
IA [auth g]IPR008195Large ribosomal subunit protein eL34Family
IA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
JA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
JA [auth h]IPR001854Large ribosomal subunit protein uL29Family
JA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
JA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
UA [auth 1]IPR002208SecY/SEC61-alpha familyFamily
UA [auth 1]IPR030659SecY conserved siteConserved Site
UA [auth 1]IPR019561Translocon Sec61/SecY, plug domainDomain
UA [auth 1]IPR023201SecY domain superfamilyHomologous Superfamily
DB [auth SF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
DB [auth SF]IPR000235Small ribosomal subunit protein uS7Family
DB [auth SF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
DB [auth SF]IPR023798Small ribosomal subunit protein uS7 domainDomain
DB [auth SF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
NB [auth SP]IPR002222Small ribosomal subunit protein uS19Family
NB [auth SP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
NB [auth SP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NB [auth SP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
QB [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QB [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QB [auth SS]IPR001892Small ribosomal subunit protein uS13Family
QB [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
AC [auth Sc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
AC [auth Sc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AC [auth Sc]IPR000289Small ribosomal subunit protein eS28Family
DC [auth Sf]IPR019954Ubiquitin conserved siteConserved Site
DC [auth Sf]IPR000626Ubiquitin-like domainDomain
DC [auth Sf]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
DC [auth Sf]IPR002906Small ribosomal subunit protein eS31Domain
DC [auth Sf]IPR019956Ubiquitin domainDomain
DC [auth Sf]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
DC [auth Sf]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily