3J3V

Atomic model of the immature 50S subunit from Bacillus subtilis (state I-a)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 0]SCOP2 FamilyRibosomal protein L32p8081584 4000508 SCOP2 (2022-06-29)
A [auth 0]SCOP2 SuperfamilyZn-binding ribosomal proteins8081585 3001320 SCOP2 (2022-06-29)
J [auth F]SCOP2 FamilyRibosomal protein L58073857 4001498 SCOP2 (2022-06-29)
J [auth F]SCOP2 SuperfamilyRL5-like8073858 3001709 SCOP2 (2022-06-29)
L [auth J]SCOP2 FamilyRibosomal protein L138066054 4003623 SCOP2 (2022-06-29)
L [auth J]SCOP2 SuperfamilyRibosomal protein L138066055 3001134 SCOP2 (2022-06-29)
M [auth K]SCOP2 FamilyRibosomal protein L148072019 4001826 SCOP2 (2022-06-29)
M [auth K]SCOP2 Superfamily50S Ribosomal protein L14-like8072020 3000433 SCOP2 (2022-06-29)
N [auth L]SCOP2 FamilyRibosomal proteins L15p and L18e8070558 4003555 SCOP2 (2022-06-29)
N [auth L]SCOP2 SuperfamilyRibosomal proteins L15p and L18e8070559 3001045 SCOP2 (2022-06-29)
O [auth N]SCOP2 FamilyProkaryotic ribosomal protein L178089013 4003526 SCOP2 (2022-06-29)
O [auth N]SCOP2 SuperfamilyProkaryotic ribosomal protein L178089014 3000995 SCOP2 (2022-06-29)
Q [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082419 3000334 SCOP2B (2022-06-29)
R [auth Q]SCOP2 FamilyRibosomal protein L208075003 4001930 SCOP2 (2022-06-29)
R [auth Q]SCOP2 SuperfamilyRibosomal protein L208075004 3000563 SCOP2 (2022-06-29)
S [auth R]SCOP2 FamilyRibosomal protein l21p8082436 4001630 SCOP2 (2022-06-29)
S [auth R]SCOP2 Superfamilyl21p-like8082437 3002005 SCOP2 (2022-06-29)
T [auth S]SCOP2B SuperfamilyRibosomal protein L228076724 3001078 SCOP2B (2022-06-29)
U [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8077095 3000210 SCOP2B (2022-06-29)
V [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8082505 3000334 SCOP2B (2022-06-29)
W [auth X]SCOP2 FamilyRibosomal protein L29 (L29p)8076729 4000600 SCOP2 (2022-06-29)
W [auth X]SCOP2 SuperfamilyRibosomal protein L29 (L29p)8076730 3000713 SCOP2 (2022-06-29)
X [auth Y]SCOP2B SuperfamilyRibosomal protein L30p/L7e8076285 3001378 SCOP2B (2022-06-29)
H [auth D]SCOP2 FamilyRibosomal protein L38089141 4002103 SCOP2 (2022-06-29)
H [auth D]SCOP2 SuperfamilyTranslational proteins8089142 3000811 SCOP2 (2022-06-29)
I [auth E]SCOP2 FamilyRibosomal protein L48080693 4003628 SCOP2 (2022-06-29)
I [auth E]SCOP2 SuperfamilyRibosomal protein L48080694 3001146 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 0]PF01783e3j3v01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
J [auth F]PF00281,PF00673e3j3vF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
K [auth G]PF00347e3j3vG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
L [auth J]PF00572e3j3vJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
M [auth K]PF00238e3j3vK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
N [auth L]PF00828e3j3vL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
O [auth N]PF01196e3j3vN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
P [auth O]PF00861e3j3vO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
Q [auth P]PF01245e3j3vP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
R [auth Q]PF00453e3j3vQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
S [auth R]PF00829e3j3vR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
B [auth 2]PF00468e3j3v21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
T [auth S]PF00237e3j3vS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
U [auth T]PF00276e3j3vT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
V [auth U]PF00467,PF17136e3j3vU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
W [auth X]PF00831e3j3vX1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
X [auth Y]PF00327e3j3vY1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
C [auth 5]PF00687e3j3v51 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
D [auth 6]PF00298e3j3v64 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
D [auth 6]PF03946e3j3v63 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
G [auth C]PF00181e3j3vC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
G [auth C]PF03947e3j3vC2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
H [auth D]PF00297e3j3vD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
I [auth E]PF00573e3j3vE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
J [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
J [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
L [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
M [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
N [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
O [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
P [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
Q [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
R [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
S [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
B [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
T [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
U [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
V [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
V [auth U]PF00467KOW motif (KOW)KOW motif- Family
W [auth X]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
X [auth Y]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
C [auth 5]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
D [auth 6]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
D [auth 6]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
G [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
G [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
H [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
I [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]50S ribosomal protein L32
J [auth F]50S ribosomal protein L5
K [auth G]50S ribosomal protein L6
L [auth J]50S ribosomal protein L13
M [auth K]50S ribosomal protein L14
N [auth L]50S ribosomal protein L15
O [auth N]50S ribosomal protein L17
P [auth O]50S ribosomal protein L18
Q [auth P]50S ribosomal protein L19
R [auth Q]50S ribosomal protein L20
S [auth R]50S ribosomal protein L21
B [auth 2]50S ribosomal protein L34
T [auth S]50S ribosomal protein L22
U [auth T]50S ribosomal protein L23
V [auth U]50S ribosomal protein L24
W [auth X]50S ribosomal protein L29
X [auth Y]50S ribosomal protein L30
C [auth 5]50S ribosomal protein L1
D [auth 6]50S ribosomal protein L11
E [auth A]ribosome RNA 23S---
F [auth B]ribosome RNA 5S---
G [auth C]50S ribosomal protein L2
H [auth D]50S ribosomal protein L3
I [auth E]50S ribosomal protein L4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
J [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
J [auth F]IPR002132Large ribosomal subunit protein uL5Family
K [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
K [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
K [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
L [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
L [auth J]IPR005822Large ribosomal subunit protein uL13Family
L [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
L [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
M [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
M [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
M [auth K]IPR000218Large ribosomal subunit protein uL14Family
M [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
N [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
N [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
N [auth L]IPR030878Large ribosomal subunit protein uL15Family
N [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
N [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
O [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
O [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
O [auth N]IPR000456Large ribosomal subunit protein bL17Family
P [auth O]IPR005484Large ribosomal subunit protein uL18Family
P [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
Q [auth P]IPR001857Large ribosomal subunit protein bL19Family
Q [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
Q [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
Q [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
R [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
R [auth Q]IPR005813Large ribosomal subunit protein bL20Family
S [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
S [auth R]IPR001787Large ribosomal subunit protein bL21Family
S [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
S [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
B [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
B [auth 2]IPR000271Large ribosomal subunit protein bL34Family
T [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
T [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
T [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
T [auth S]IPR001063Large ribosomal subunit protein uL22Family
T [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
U [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
U [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
U [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
U [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
V [auth U]IPR003256Large ribosomal subunit protein uL24Family
V [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
V [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
V [auth U]IPR005824KOWDomain
V [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
W [auth X]IPR001854Large ribosomal subunit protein uL29Family
W [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
W [auth X]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
X [auth Y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
X [auth Y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
X [auth Y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
X [auth Y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
C [auth 5]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
C [auth 5]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
C [auth 5]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
C [auth 5]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
C [auth 5]IPR002143Large ribosomal subunit protein uL1Family
C [auth 5]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
D [auth 6]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
D [auth 6]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
D [auth 6]IPR000911Ribosomal protein uL11Family
D [auth 6]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
D [auth 6]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
D [auth 6]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
D [auth 6]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
G [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
G [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
G [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth C]IPR002171Large ribosomal subunit protein uL2Family
H [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
H [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth D]IPR000597Large ribosomal subunit protein uL3Family
I [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
I [auth E]IPR002136Large ribosomal subunit protein uL4Family
I [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily