3H3X
Structure of the V74M large subunit mutant of NI-FE hydrogenase in an oxidized state
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8054419 | 3002291 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | HydA C-terminal domain-like | 8037588 | 3001861 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | HydA C-terminal domain-like | 8037588 | 3001861 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8054419 | 3002291 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Nqo6/HydA N-terminal domain-like | 8054419 | 3002291 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | HydA C-terminal domain-like | 8037588 | 3001861 | SCOP2B (2022-06-29) |
B [auth Q] | SCOP2B Superfamily | HydB/Nqo4-like | 8037575 | 3001849 | SCOP2B (2022-06-29) |
D [auth R] | SCOP2B Superfamily | HydB/Nqo4-like | 8037575 | 3001849 | SCOP2B (2022-06-29) |
F [auth S] | SCOP2B Superfamily | HydB/Nqo4-like | 8037575 | 3001849 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01058 | e3h3xA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF01058 | ECOD (1.6) |
A | PF14720 | e3h3xA1 | A: few secondary structure elements | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: PF14720 | ECOD (1.6) |
C [auth B] | PF01058 | e3h3xB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF01058 | ECOD (1.6) |
C [auth B] | PF14720 | e3h3xB1 | A: few secondary structure elements | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: PF14720 | ECOD (1.6) |
E [auth C] | PF01058 | e3h3xC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: CheY-like | F: PF01058 | ECOD (1.6) |
E [auth C] | PF14720 | e3h3xC1 | A: few secondary structure elements | X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit (From Topology) | T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | F: PF14720 | ECOD (1.6) |
B [auth Q] | PF00374 | e3h3xQ1 | A: beta meanders | X: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | H: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | T: all-beta domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
B [auth Q] | PF00374 | e3h3xQ2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: PF00374 | ECOD (1.6) |
B [auth Q] | PF00374 | e3h3xQ3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
D [auth R] | PF00374 | e3h3xR1 | A: beta meanders | X: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | H: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | T: all-beta domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
D [auth R] | PF00374 | e3h3xR2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: PF00374 | ECOD (1.6) |
D [auth R] | PF00374 | e3h3xR3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
F [auth S] | PF00374 | e3h3xS1 | A: beta meanders | X: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | H: all-beta domain in nickel-iron hydrogenase large subunit (From Topology) | T: all-beta domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
F [auth S] | PF00374 | e3h3xS2 | A: alpha complex topology | X: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology) | T: alpha-helical domain in nickel-iron hydrogenase, large subunit | F: PF00374 | ECOD (1.6) |
F [auth S] | PF00374 | e3h3xS3 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology) | T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit | F: PF00374 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C [auth B], E [auth C] | PF14720 | NiFe/NiFeSe hydrogenase small subunit C-terminal (NiFe_hyd_SSU_C) | NiFe/NiFeSe hydrogenase small subunit C-terminal | - | Family |
A, C [auth B], E [auth C] | PF01058 | NADH ubiquinone oxidoreductase, 20 Kd subunit (Oxidored_q6) | NADH ubiquinone oxidoreductase, 20 Kd subunit | - | Family |
B [auth Q], D [auth R], F [auth S] | PF00374 | Nickel-dependent hydrogenase (NiFeSe_Hases) | Nickel-dependent hydrogenase | - | Family |