Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPrim-pol domain-like8092989 3001829 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF22448e3h20A2 A: alpha bundlesX: Primase helical domain (From Topology)H: Primase helical domain (From Topology)T: Primase helical domainF: PF22448ECOD (1.6)
APF16793e3h20A1 A: a+b complex topologyX: Prim-pol domain (From Topology)H: Prim-pol domain (From Topology)T: Prim-pol domainF: PF16793ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.1490.240 Alpha Beta 2-Layer Sandwich Dna Ligase domain 1CATH (4.3.0)
A3.30.70.1790 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RepB DNA-primase, N-terminal domainCATH (4.3.0)
A1.10.1240.50 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains) Chain A, domain 1CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16793RepB DNA-primase from phage plasmid (RepB_primase)RepB DNA-primase from phage plasmidRepB_primase is a DNA-primase produced by P4-like phages. It is a zinc-independent primase unlike Pri-type primases. It takes up a dumbbell shaped consisting of an N-terminal catalytic domain separated by a long alpha-helix plus tether and a C-termin ...RepB_primase is a DNA-primase produced by P4-like phages. It is a zinc-independent primase unlike Pri-type primases. It takes up a dumbbell shaped consisting of an N-terminal catalytic domain separated by a long alpha-helix plus tether and a C-terminal helical-bundle domain. Primases are necessary for phage replication. RepBprime primases such as in this family recognise both ssiA and ssiB, ie only 1 single-stranded primase initiation site on each strand, independently of each other and then synthesise primers that are elongated by DNA polymerase III. The phage is thus replicated exclusively in leading strand mode [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR039459RepB-like DNA primase domainDomain