3DL8
Structure of the complex of aquifex aeolicus SecYEG and bacillus subtilis SecA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Pre-protein crosslinking domain of SecA | 8040159 | 3001119 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Helical scaffold and wing domains of SecA | 8040160 | 3001322 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040165 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040165 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Helical scaffold and wing domains of SecA | 8040160 | 3001322 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8040163 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Pre-protein crosslinking domain of SecA | 8040159 | 3001119 | SCOP2B (2022-06-29) |
E [auth C] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053304 | 3002174 | SCOP2B (2022-06-29) |
F [auth D] | SCOP2 Family | Protein translocase subunit SecE-like | 8047939 | 4005885 | SCOP2 (2022-06-29) |
F [auth D] | SCOP2 Superfamily | Protein translocase subunit SecE-like | 8053304 | 3002174 | SCOP2 (2022-06-29) |
G [auth E] | SCOP2 Family | Preprotein translocase SecG subunit -like | 8044985 | 4004237 | SCOP2 (2022-06-29) |
G [auth E] | SCOP2 Superfamily | Preprotein translocase subunit SecG-like | 8053303 | 3002175 | SCOP2 (2022-06-29) |
H [auth F] | SCOP2B Superfamily | Preprotein translocase subunit SecG-like | 8053303 | 3002175 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01043 | e3dl8A10 | A: alpha arrays | X: Pre-protein crosslinking domain of SecA (From Topology) | H: Pre-protein crosslinking domain of SecA (From Topology) | T: Pre-protein crosslinking domain of SecA | F: PF01043 | ECOD (1.6) |
A | PF07516 | e3dl8A11 | A: alpha complex topology | X: Helical scaffold and wing domains of SecA (From Topology) | H: Helical scaffold and wing domains of SecA (From Topology) | T: Helical scaffold and wing domains of SecA | F: PF07516 | ECOD (1.6) |
A | PF07517 | e3dl8A12 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07517 | ECOD (1.6) |
A | PF21090 | e3dl8A9 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF21090 | ECOD (1.6) |
B | PF01043 | e3dl8B10 | A: alpha arrays | X: Pre-protein crosslinking domain of SecA (From Topology) | H: Pre-protein crosslinking domain of SecA (From Topology) | T: Pre-protein crosslinking domain of SecA | F: PF01043 | ECOD (1.6) |
B | PF07516 | e3dl8B11 | A: alpha complex topology | X: Helical scaffold and wing domains of SecA (From Topology) | H: Helical scaffold and wing domains of SecA (From Topology) | T: Helical scaffold and wing domains of SecA | F: PF07516 | ECOD (1.6) |
B | PF07517 | e3dl8B12 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF07517 | ECOD (1.6) |
B | PF21090 | e3dl8B9 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF21090 | ECOD (1.6) |
C [auth G] | PF00344 | e3dl8G1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: PF00344 | ECOD (1.6) |
D [auth H] | PF00344 | e3dl8H2 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: PF00344 | ECOD (1.6) |
G [auth E] | PF03840 | e3dl8E1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: PF03840 | ECOD (1.6) |
H [auth F] | PF03840 | e3dl8F1 | A: alpha bundles | X: Protein-export membrane protein secG (From Topology) | H: Protein-export membrane protein secG (From Topology) | T: Protein-export membrane protein secG | F: PF03840 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01043 | SecA preprotein cross-linking domain (SecA_PP_bind) | SecA preprotein cross-linking domain | The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domai ... | Domain | |
PF07517 | SecA DEAD-like domain (SecA_DEAD) | SecA DEAD-like domain | SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner [1,2]. This do ... | Domain | |
PF07516 | SecA Wing and Scaffold domain (SecA_SW) | SecA Wing and Scaffold domain | - | Family | |
PF21090 | SecA P-loop domain (P-loop_SecA) | SecA P-loop domain | SecA is the preprotein translocase ATPase subunit and a superfamily 2 (SF2) RNA helicase [4]. This entry corresponds to the second P-loop domain. | Domain | |
C [auth G], D [auth H] | PF00344 | SecY (SecY) | SecY | - | Family |
E [auth C], F [auth D] | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family |
G [auth E], H [auth F] | PF03840 | Preprotein translocase SecG subunit (SecG) | Preprotein translocase SecG subunit | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |