3DKW
Crystal Structure of DNR from Pseudomonas aeruginosa.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | cNMP_binding | e3dkwA3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
A | HTH_Crp_2 | e3dkwA4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
D | cNMP_binding | e3dkwD3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
D | HTH_Crp_2 | e3dkwD4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
E | cNMP_binding | e3dkwE3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
E | HTH_Crp_2 | e3dkwE4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
G | cNMP_binding | e3dkwG5 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
G | HTH_Crp_2 | e3dkwG6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
H | cNMP_binding | e3dkwH5 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
H | HTH_Crp_2 | e3dkwH6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
J | cNMP_binding | e3dkwJ5 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
J | HTH_Crp_2 | e3dkwJ6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
B | cNMP_binding | e3dkwB5 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
B | HTH_Crp_2 | e3dkwB6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
C | cNMP_binding | e3dkwC3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
C | HTH_Crp_2 | e3dkwC4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
F | cNMP_binding | e3dkwF5 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
F | HTH_Crp_2 | e3dkwF6 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
I | cNMP_binding | e3dkwI3 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: cNMP_binding | ECOD (1.6) |
I | HTH_Crp_2 | e3dkwI4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: HTH_Crp_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF13545 | Crp-like helix-turn-helix domain (HTH_Crp_2) | Crp-like helix-turn-helix domain | This family represents a crp-like helix-turn-helix domain that is likely to bind DNA. | Domain | |
PF00027 | Cyclic nucleotide-binding domain (cNMP_binding) | Cyclic nucleotide-binding domain | This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000595 | Cyclic nucleotide-binding domain | Domain | |
IPR018490 | Cyclic nucleotide-binding domain superfamily | Homologous Superfamily | |
IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily | |
IPR012318 | Crp-type HTH domain | Domain | |
IPR014710 | RmlC-like jelly roll fold | Homologous Superfamily |