3DKU
Crystal structure of Nudix hydrolase Orf153, ymfB, from Escherichia coli K-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
F | SCOP2 Family | MutT-like | 8081765 | 4001887 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Nudix | 8081766 | 3000098 | SCOP2 (2022-06-29) |
A | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Nudix | 8081766 | 3000098 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | PF00293 | e3dkuE1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
F | PF00293 | e3dkuF1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
A | PF00293 | e3dkuA1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
B | PF00293 | e3dkuB1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
C | PF00293 | e3dkuC1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
D | PF00293 | e3dkuD1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
G | PF00293 | e3dkuG1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
H | PF00293 | e3dkuH1 | A: a+b two layers | X: beta-Grasp | H: Nudix (From Topology) | T: Nudix | F: PF00293 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Putative phosphohydrolase |
| - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000086 | NUDIX hydrolase domain | Domain | |
IPR015797 | NUDIX hydrolase-like domain superfamily | Homologous Superfamily | |
IPR020084 | NUDIX hydrolase, conserved site | Conserved Site | |
IPR020476 | NUDIX hydrolase | Domain | |
IPR033713 | Phosphatase NudJ | Family |