3DCX

Crystal structure of a duf1696 family protein with a pleckstrin-homology domain (shew_0819) from shewanella loihica pv-4 at 2.00 A resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3dcxa1	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
A	d3dcxa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
B	d3dcxb_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
C	d3dcxc_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
D	d3dcxd_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)
E	d3dcxe_	All beta proteins	PH domain-like barrel	PH domain-like	BPHL domain	Uncharacterized protein Shew0819	(Shewanella loihica PV-4 ) [TaxId: 323850 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BPHL domain	8028269	4001832	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8040648	3000134	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PH domain-like	8040648	3000134	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	bPH_1	e3dcxA1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: bPH_1	ECOD (1.6)
B	bPH_1	e3dcxB1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: bPH_1	ECOD (1.6)
C	bPH_1	e3dcxC1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: bPH_1	ECOD (1.6)
D	bPH_1	e3dcxD1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: bPH_1	ECOD (1.6)
E	bPH_1	e3dcxE1	A: beta barrels	X: PH domain-like	H: PH domain-like (From Topology)	T: PH domain-like	F: bPH_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
B	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
C	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
D	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)
E	2.30.29.50	Mainly Beta	Roll	PH-domain like	Bacterial Pleckstrin homology domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E	PF08000	Bacterial PH domain (bPH_1)	Bacterial PH domain	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in ...	This family contains many bacterial hypothetical proteins. The structures of Swiss:A1SD03, PDB:3hsa, and Swiss:A3QB43, PDB:3dcx, show similarities to the PH or pleckstrin homology domain. First evidence of PH-like domains in bacteria suggests role in cell envelope stress response [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E	IPR012544	Bacterial Pleckstrin homology domain	Domain
A, B, C, D, E	IPR037063	Bacterial Pleckstrin homology domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.