3DA1

X-Ray structure of the glycerol-3-phosphate dehydrogenase from Bacillus halodurans complexed with FAD. Northeast Structural Genomics Consortium target BhR167.

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	GlpD C-terminal domain-like	8046314	4005013	SCOP2 (2022-06-29)
A	SCOP2 Family	D-aminoacid oxidase-like	8091749	4000124	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Bfd-like	8091748	3002540	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Flavoreductase-like	8091750	3000055	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF16901	e3da1A2	A: alpha arrays	X: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	H: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase (From Topology)	T: C-terminal alpha domain in Alpha-Glycerophosphate Oxidase	F: PF16901	ECOD (1.6)
A	PF01266	e3da1A3	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: PF01266	ECOD (1.6)
A	PF01266	e3da1A4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: PF01266	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
A	3.30.9.10	Alpha Beta	2-Layer Sandwich	D-Amino Acid Oxidase	Chain A, domain 2	CATH (4.3.0)
A	1.10.8.870	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01266	FAD dependent oxidoreductase (DAO)	FAD dependent oxidoreductase	This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.	Domain
A	PF16901	C-terminal domain of alpha-glycerophosphate oxidase (DAO_C)	C-terminal domain of alpha-glycerophosphate oxidase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Glycerol-3-phosphate dehydrogenase	binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity glycerol-3-phosphate dehydrogenase (quinone) activity oxidoreductase activity, acting on CH-OH group of donors oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor catalytic activity	organic substance metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process cellular metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process metabolic process cellular process alditol phosphate metabolic process phosphorus metabolic process carbohydrate metabolic process polyol metabolic process alcohol catabolic process catabolic process organic substance metabolic process glycerol-3-phosphate metabolic process organophosphate metabolic process cellular metabolic process phosphate-containing compound metabolic process carbohydrate derivative metabolic process metabolic process cellular process alditol phosphate metabolic process phosphorus metabolic process carbohydrate metabolic process polyol metabolic process alcohol catabolic process catabolic process organic hydroxy compound metabolic process polyol catabolic process carbohydrate catabolic process primary metabolic process alcohol metabolic process alditol catabolic process glycerol metabolic process alditol metabolic process organic hydroxy compound catabolic process glycerol catabolic process small molecule metabolic process small molecule catabolic process organic substance catabolic process	protein-containing complex intracellular anatomical structure catalytic complex oxidoreductase complex cytoplasm cellular anatomical entity glycerol-3-phosphate dehydrogenase (FAD) complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000447	FAD-dependent glycerol-3-phosphate dehydrogenase	Family
A	IPR031656	Alpha-glycerophosphate oxidase, C-terminal	Domain
A	IPR038299	Alpha-glycerophosphate oxidase, C-terminal domain superfamily	Homologous Superfamily
A	IPR006076	FAD dependent oxidoreductase	Domain
A	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.