3CES
Crystal Structure of E.coli MnmG (GidA), a Highly-Conserved tRNA Modifying Enzyme
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | GidA-like | 8049416 | 4006485 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Thi4/GidA-like | 8092224 | 3000051 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Helix-hairpin-helix tandem | 8092228 | 3000163 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8092228 | 3000163 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Thi4/GidA-like | 8092224 | 3000051 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Thi4/GidA-like | 8092224 | 3000051 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8092228 | 3000163 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Thi4/GidA-like | 8092224 | 3000051 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Helix-hairpin-helix tandem | 8092228 | 3000163 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21680 | e3cesA3 | A: alpha arrays | X: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | T: C-terminal helical domain in tRNA modifying enzyme GidA | F: PF21680 | ECOD (1.6) |
A | PF01134 | e3cesA2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF01134 | ECOD (1.6) |
A | PF01134 | e3cesA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF01134 | ECOD (1.6) |
B | PF21680 | e3cesB2 | A: alpha arrays | X: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | T: C-terminal helical domain in tRNA modifying enzyme GidA | F: PF21680 | ECOD (1.6) |
B | PF01134 | e3cesB5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF01134 | ECOD (1.6) |
B | PF01134 | e3cesB4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF01134 | ECOD (1.6) |
D | PF21680 | e3cesD3 | A: alpha arrays | X: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | T: C-terminal helical domain in tRNA modifying enzyme GidA | F: PF21680 | ECOD (1.6) |
D | PF01134 | e3cesD5 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF01134 | ECOD (1.6) |
D | PF01134 | e3cesD4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF01134 | ECOD (1.6) |
C | PF21680 | e3cesC3 | A: alpha arrays | X: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | H: C-terminal helical domain in tRNA modifying enzyme GidA (From Topology) | T: C-terminal helical domain in tRNA modifying enzyme GidA | F: PF21680 | ECOD (1.6) |
C | PF01134 | e3cesC2 | A: a+b two layers | X: FAD-linked reductases, C-terminal domain-like | H: FAD-linked reductases-C (From Topology) | T: FAD-linked reductases-C | F: PF01134 | ECOD (1.6) |
C | PF01134 | e3cesC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: PF01134 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.30.260 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
A | 1.10.10.1800 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG/GidA | CATH (4.3.0) |
B | 2.40.30.260 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
D | 2.40.30.260 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
C | 2.40.30.260 | Mainly Beta | Beta Barrel | Elongation Factor Tu (Ef-tu) | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21680 | tRNA modifying enzyme MnmG/GidA C-terminal helical domain (GIDA_C_1st) | tRNA modifying enzyme MnmG/GidA C-terminal helical domain | The GidA associated domain is a domain that has been identified at the C-terminus of protein GidA. It consists of several helices, the last three being rather short and forming small bundle. GidA is an tRNA modification enzyme found in bacteria and m ... | Domain | |
PF01134 | Glucose inhibited division protein A (GIDA) | Glucose inhibited division protein A | - | Family |