3C0K
Crystal Structure of a ribosomal RNA methyltranferase
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF17785 | e3c0kA2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF17785 | ECOD (1.6) |
A | PF10672 | e3c0kA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF10672 | ECOD (1.6) |
B | PF17785 | e3c0kB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: PF17785 | ECOD (1.6) |
B | PF10672 | e3c0kB2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PF10672 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
A | 3.30.750.80 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | RNA methyltransferase domain (HRMD) like | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
B | 2.30.130.10 | Mainly Beta | Roll | Archaeosine Trna-guanine Transglycosylase | Chain: A, domain 4 | CATH (4.3.0) |
B | 3.30.750.80 | Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | RNA methyltransferase domain (HRMD) like | CATH (4.3.0) |
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF10672 | S-adenosylmethionine-dependent methyltransferase (Methyltrans_SAM) | S-adenosylmethionine-dependent methyltransferase | - | Family | |
PF17785 | PUA-like domain (PUA_3) | PUA-like domain | This PUA-like domain is found at the N-terminus of SAM-dependent methyltransferases [1]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015947 | PUA-like superfamily | Homologous Superfamily | |
IPR019614 | S-adenosylmethionine-dependent methyltransferase | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR036974 | PUA domain superfamily | Homologous Superfamily | |
IPR023542 | Ribosomal RNA large subunit methyltransferase I | Family | |
IPR002478 | PUA domain | Domain | |
IPR041532 | RlmI-like, PUA domain | Domain |