Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad3b5na2 Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Synaptobrevin baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ad3b5na3 Artifacts Tags Tags Tags N-terminal Tags baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Ed3b5ne_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Synaptobrevin baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Id3b5ni_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Synaptobrevin baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Bd3b5nb_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Syntaxin 1A baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Fd3b5nf_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Syntaxin 1A baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Jd3b5nj_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex Syntaxin 1A baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd3b5nc2 Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex automated matches baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd3b5nc4 Artifacts Tags Tags Tags C-terminal Tags baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Cd3b5nc3 Artifacts Tags Tags Tags N-terminal Tags baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Gd3b5ng1 Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex automated matches baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Gd3b5ng2 Artifacts Tags Tags Tags N-terminal Tags baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)
Kd3b5nk_ Coiled coil proteins Parallel coiled-coil SNARE fusion complex SNARE fusion complex automated matches baker's yeast (Saccharomyces cerevisiae ) [TaxId: 4932 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilySNARE fusion complex8026446 4003812 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySNARE fusion complex8038825 3001549 SCOP2 (2022-06-29)
ESCOP2B SuperfamilySNARE fusion complex8038825 3001549 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySNARE fusion complex8038825 3001549 SCOP2B (2022-06-29)
BSCOP2 FamilySNARE fusion complex8026447 4003812 SCOP2 (2022-06-29)
BSCOP2 SuperfamilySNARE fusion complex8038826 3001549 SCOP2 (2022-06-29)
FSCOP2B SuperfamilySNARE fusion complex8038826 3001549 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySNARE fusion complex8038826 3001549 SCOP2B (2022-06-29)
CSCOP2 FamilySNARE fusion complex8026451 4003812 SCOP2 (2022-06-29)
CSCOP2 SuperfamilySNARE fusion complex8038830 3001549 SCOP2 (2022-06-29)
GSCOP2B SuperfamilySNARE fusion complex8038830 3001549 SCOP2B (2022-06-29)
KSCOP2B SuperfamilySNARE fusion complex8038830 3001549 SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
E1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
I1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
B1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
F1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
J1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
C1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
G1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
K1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
D1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
H1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)
L1.20.5.110 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, E, I
PF00957Synaptobrevin (Synaptobrevin)Synaptobrevin- Family
B, F, J
PF05739SNARE domain (SNARE)SNARE domain- Family
B, F, J
PF00804Syntaxin (Syntaxin)SyntaxinSyntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (Pfam:PF05739), and an N-terminal d ...Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (Pfam:PF05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A (Swiss:O35526) it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors [6].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, E, I
Synaptobrevin homolog 1
B, F, J
Protein SSO1
C, G, K
Protein transport protein SEC9
D, H, L
Protein transport protein SEC9