3AOI
RNA polymerase-Gfh1 complex (Crystal type 2)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
G | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
K | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | RBP11-like subunits of RNA polymerase | 8039604 | 3001655 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Insert subdomain of RNA polymerase alpha subunit | 8039607 | 3001500 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
M | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039611 | 3001330 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039613 | 3001330 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039613 | 3001330 | SCOP2B (2022-06-29) |
N | SCOP2B Superfamily | Two-barrel nucleic acid polymerases | 8039613 | 3001330 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | RPB6/omega subunit-like | 8039612 | 3000189 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | RPB6/omega subunit-like | 8039612 | 3000189 | SCOP2B (2022-06-29) |
O | SCOP2B Superfamily | RPB6/omega subunit-like | 8039612 | 3000189 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G | PF01193 | e3aoiG1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
G | PF01000 | e3aoiG2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
A | PF01193 | e3aoiA1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
A | PF01000 | e3aoiA2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
B | PF01193 | e3aoiB1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
B | PF01000 | e3aoiB2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
F | PF01193 | e3aoiF1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
F | PF01000 | e3aoiF2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
K | PF01193 | e3aoiK1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
K | PF01000 | e3aoiK2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
L | PF01193 | e3aoiL1 | A: a+b two layers | X: DCoH-like | H: RBP11-like subunits of RNA polymerase (From Topology) | T: RBP11-like subunits of RNA polymerase | F: PF01193 | ECOD (1.6) |
L | PF01000 | e3aoiL2 | A: a+b complex topology | X: Ribosomal protein TL5/L25 C-terminal domain-like | H: Insert subdomain of RNA polymerase alpha subunit (From Topology) | T: Insert subdomain of RNA polymerase alpha subunit | F: PF01000 | ECOD (1.6) |
C | PF00562 | e3aoiC7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
C | F_UNCLASSIFIED | e3aoiC21 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
C | PF00562 | e3aoiC6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
C | PF04563,PF04565 | e3aoiC16 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
C | PF04561 | e3aoiC15 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
C | PF10385 | e3aoiC17 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF10385 | ECOD (1.6) |
C | PF00562,PF04560 | e3aoiC18 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
H | PF00562 | e3aoiH7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
H | F_UNCLASSIFIED | e3aoiH21 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
H | PF00562 | e3aoiH6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
H | PF04563,PF04565 | e3aoiH16 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
H | PF04561 | e3aoiH15 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
H | PF10385 | e3aoiH17 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF10385 | ECOD (1.6) |
H | PF00562,PF04560 | e3aoiH18 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
M | PF00562 | e3aoiM7 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00562 | ECOD (1.6) |
M | F_UNCLASSIFIED | e3aoiM21 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
M | PF00562 | e3aoiM6 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: PF00562 | ECOD (1.6) |
M | PF04563,PF04565 | e3aoiM2 | A: a+b complex topology | X: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: N-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: N-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF04563,PF04565 | ECOD (1.6) |
M | PF04561 | e3aoiM15 | A: a+b complex topology | X: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: insertion domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: insertion domain in beta subunit of DNA dependent RNA-polymerase | F: PF04561 | ECOD (1.6) |
M | PF10385 | e3aoiM17 | A: a+b complex topology | X: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: barrel domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: barrel domain in beta subunit of DNA dependent RNA-polymerase | F: PF10385 | ECOD (1.6) |
M | PF00562,PF04560 | e3aoiM18 | A: a+b complex topology | X: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | H: C-terminal domain in beta subunit of DNA dependent RNA-polymerase (From Topology) | T: C-terminal domain in beta subunit of DNA dependent RNA-polymerase | F: PF00562,PF04560 | ECOD (1.6) |
D | PF00623 | e3aoiD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
D | F_UNCLASSIFIED | e3aoiD6 | A: alpha arrays | X: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | H: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | T: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e3aoiD7 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e3aoiD10 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
D | PF04997 | e3aoiD3 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
D | PF04998 | e3aoiD2 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
D | PF04998,PF05000 | e3aoiD4 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
D | PF04983 | e3aoiD9 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
I | PF00623 | e3aoiI4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
I | F_UNCLASSIFIED | e3aoiI3 | A: alpha arrays | X: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | H: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | T: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e3aoiI9 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: F_UNCLASSIFIED | ECOD (1.6) |
I | F_UNCLASSIFIED | e3aoiI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
I | PF04997 | e3aoiI8 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
I | PF04998 | e3aoiI10 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
I | PF04998,PF05000 | e3aoiI6 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
I | PF04983 | e3aoiI2 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
N | PF00623 | e3aoiN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF00623 | ECOD (1.6) |
N | F_UNCLASSIFIED | e3aoiN8 | A: alpha arrays | X: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | H: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit (From Topology) | T: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit | F: F_UNCLASSIFIED | ECOD (1.6) |
N | F_UNCLASSIFIED | e3aoiN5 | A: a+b two layers | X: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase (From Topology) | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: F_UNCLASSIFIED | ECOD (1.6) |
N | F_UNCLASSIFIED | e3aoiN10 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Single hybrid motif | F: F_UNCLASSIFIED | ECOD (1.6) |
N | PF04997 | e3aoiN4 | A: a+b complex topology | X: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | H: N-terminal domain in RNA-polymerase beta-prime subunit (From Topology) | T: N-terminal domain in RNA-polymerase beta-prime subunit | F: PF04997 | ECOD (1.6) |
N | PF04998 | e3aoiN2 | A: a+b complex topology | X: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: central helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: central helical domain in RNA-polymerase beta-prime subunit | F: PF04998 | ECOD (1.6) |
N | PF04998,PF05000 | e3aoiN6 | A: a+b complex topology | X: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: second helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: second helical domain in RNA-polymerase beta-prime subunit | F: PF04998,PF05000 | ECOD (1.6) |
N | PF04983 | e3aoiN7 | A: a+b complex topology | X: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | H: first helical domain in RNA-polymerase beta-prime subunit (From Topology) | T: first helical domain in RNA-polymerase beta-prime subunit | F: PF04983 | ECOD (1.6) |
E | PF01192 | e3aoiE1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RNA polymerase omega subunit | F: PF01192 | ECOD (1.6) |
J | PF01192 | e3aoiJ1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RNA polymerase omega subunit | F: PF01192 | ECOD (1.6) |
O | PF01192 | e3aoiO1 | A: alpha arrays | X: RPB6/omega subunit-like (From Homology) | H: RPB6/omega subunit-like | T: RNA polymerase omega subunit | F: PF01192 | ECOD (1.6) |
V [auth X] | PF03449 | e3aoiX1 | A: alpha bundles | X: Long alpha-hairpin | H: GreA transcript cleavage protein, N-terminal domain (From Topology) | T: GreA transcript cleavage protein, N-terminal domain | F: PF03449 | ECOD (1.6) |
V [auth X] | PF01272 | e3aoiX2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: PF01272 | ECOD (1.6) |
W [auth Y] | PF03449 | e3aoiY1 | A: alpha bundles | X: Long alpha-hairpin | H: GreA transcript cleavage protein, N-terminal domain (From Topology) | T: GreA transcript cleavage protein, N-terminal domain | F: PF03449 | ECOD (1.6) |
W [auth Y] | PF01272 | e3aoiY2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: PF01272 | ECOD (1.6) |
X [auth Z] | PF03449 | e3aoiZ1 | A: alpha bundles | X: Long alpha-hairpin | H: GreA transcript cleavage protein, N-terminal domain (From Topology) | T: GreA transcript cleavage protein, N-terminal domain | F: PF03449 | ECOD (1.6) |
X [auth Z] | PF01272 | e3aoiZ2 | A: a+b two layers | X: FKBP-like | H: FKBP-like | T: FKBP-like | F: PF01272 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01193 | RNA polymerase Rpb3/Rpb11 dimerisation domain (RNA_pol_L) | RNA polymerase Rpb3/Rpb11 dimerisation domain | The two eukaryotic subunits Rpb3 and Rpb11 dimerise to from a platform onto which the other subunits of the RNA polymerase assemble (D/L in archaea). The prokaryotic equivalent of the Rpb3/Rpb11 platform is the alpha-alpha dimer. The dimerisation do ... | Domain | |
PF01000 | RNA polymerase Rpb3/RpoA insert domain (RNA_pol_A_bac) | RNA polymerase Rpb3/RpoA insert domain | Members of this family include: alpha subunit from eubacteria alpha subunits from chloroplasts Rpb3 subunits from eukaryotes RpoD subunits from archaeal | Domain | |
PF04561 | RNA polymerase Rpb2, domain 2 (RNA_pol_Rpb2_2) | RNA polymerase Rpb2, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA po ... | Domain | |
PF10385 | RNA polymerase beta subunit external 1 domain (RNA_pol_Rpb2_45) | RNA polymerase beta subunit external 1 domain | RNA polymerases catalyse the DNA-dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared with three in eukaryotes (not including mitochondrial or chloroplast polymerases). This domain in prokaryotes spans the gap between ... | Domain | |
PF04560 | RNA polymerase Rpb2, domain 7 (RNA_pol_Rpb2_7) | RNA polymerase Rpb2, domain 7 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Rpb2 is the second largest subunit of the RNA p ... | Domain | |
PF04565 | RNA polymerase Rpb2, domain 3 (RNA_pol_Rpb2_3) | RNA polymerase Rpb2, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is ... | Domain | |
PF04563 | RNA polymerase beta subunit (RNA_pol_Rpb2_1) | RNA polymerase beta subunit | - | Family | |
PF00562 | RNA polymerase Rpb2, domain 6 (RNA_pol_Rpb2_6) | RNA polymerase Rpb2, domain 6 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain ... | Domain | |
PF00623 | RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) | RNA polymerase Rpb1, domain 2 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 2, contains the active site ... | Domain | |
PF05000 | RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) | RNA polymerase Rpb1, domain 4 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 4, represents the funnel do ... | Domain | |
PF04983 | RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) | RNA polymerase Rpb1, domain 3 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 3, represents the pore doma ... | Domain | |
PF04998 | RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) | RNA polymerase Rpb1, domain 5 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 5, represents the discontin ... | Domain | |
PF04997 | RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) | RNA polymerase Rpb1, domain 1 | RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain, domain 1, represents the clamp do ... | Domain | |
PF01192 | RNA polymerase Rpb6 (RNA_pol_Rpb6) | RNA polymerase Rpb6 | - | Family | |
V [auth X], W [auth Y], X [auth Z] | PF03449 | Transcription elongation factor, N-terminal (GreA_GreB_N) | Transcription elongation factor, N-terminal | This domain adopts a long alpha-hairpin structure. | Domain |
V [auth X], W [auth Y], X [auth Z] | PF01272 | Transcription elongation factor, GreA/GreB, C-term (GreA_GreB) | Transcription elongation factor, GreA/GreB, C-term | This domain has an FKBP-like fold. | Domain |