3AJD
Crystal structure of ATRM4
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d3ajda_ | Alpha and beta proteins (a/b) | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | automated matches | automated matches | METHANOCOCCUS JANNASCHII (Methanocaldococcus jannaschii ) [TaxId: 2190 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Methyltr_RsmF_N_1 | e3ajdA3 | A: a+b two layers | X: Alpha-beta plaits | H: NOL1/NOP2/sun N-terminal ferredoxin-like domain (From Topology) | T: NOL1/NOP2/sun N-terminal ferredoxin-like domain | F: Methyltr_RsmF_N_1 | ECOD (1.6) |
A | Methyltr_RsmB-F_1 | e3ajdA2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: Methyltr_RsmB-F_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.70.1170 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Sun protein | CATH (4.3.0) |
A | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01189 | 16S rRNA methyltransferase RsmB/F (Methyltr_RsmB-F) | 16S rRNA methyltransferase RsmB/F | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001678 | SAM-dependent methyltransferase RsmB-F/NOP2-type domain | Domain | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR049560 | SAM-dependent methyltransferase RsmB-F/NOP2-type, catalytic core | Domain | |
IPR023267 | RNA (C5-cytosine) methyltransferase | Family | |
IPR011023 | Nop2p | Domain | |
IPR018314 | Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site | Conserved Site |