2YSM
Solution structure of the second and third PHD domain from Histone-lysine N-methyltransferase 2C (KMT2C/MLL3)
Domain Annotation: ECOD Classification ECOD Database Homepage
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00628 | PHD-finger (PHD) | PHD-finger | PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains [2]. Several PHD fingers have been identified as binding modules of methylated histone H3 [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR046341 | SET domain superfamily | Homologous Superfamily | |
IPR001214 | SET domain | Domain | |
IPR019787 | Zinc finger, PHD-finger | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR037877 | HMT2C, PHD3 | Domain | |
IPR041968 | KMT2C, ePHD2 | Domain | |
IPR047004 | KMT2C, PHD2 domain | Domain | |
IPR003616 | Post-SET domain | Domain | |
IPR034732 | Extended PHD (ePHD) domain | Domain | |
IPR041967 | KMT2C, ePHD1 | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR003889 | FY-rich, C-terminal | Conserved Site | |
IPR000637 | HMG-I/HMG-Y, DNA-binding, conserved site | Conserved Site | |
IPR047005 | KMT2C, PHD6 domain | Domain | |
IPR003888 | FY-rich, N-terminal | Conserved Site | |
IPR001841 | Zinc finger, RING-type | Domain | |
IPR009071 | High mobility group box domain | Domain | |
IPR047003 | KMT2C, PHD4 domain | Domain | |
IPR036910 | High mobility group box domain superfamily | Homologous Superfamily |