2XU0
Crystal structure of the NTS-DBL1(alpha-1) domain of the Plasmodium falciparum membrane protein 1 (PfEMP1) from the varO strain.
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF05424,PF15447 | e2xu0A1 | A: alpha bundles | X: Duffy-binding-like domain, N-terminal subdomain (From Topology) | H: Duffy-binding-like domain, N-terminal subdomain (From Topology) | T: Duffy-binding-like domain, N-terminal subdomain | F: PF05424,PF15447 | ECOD (1.6) |
A | PF22672 | e2xu0A2 | A: alpha bundles | X: Duffy-binding-like domain, C-terminal subdomain (From Topology) | H: Duffy-binding-like domain, C-terminal subdomain (From Topology) | T: Duffy-binding-like domain, C-terminal subdomain | F: PF22672 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05424 | Duffy binding domain (Duffy_binding) | Duffy binding domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
ERYTHROCYTE MEMBRANE PROTEIN 1 | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR008602 | Duffy-antigen binding domain | Domain | |
IPR004258 | Duffy-binding-like domain | Domain | |
IPR018247 | EF-Hand 1, calcium-binding site | Binding Site | |
IPR042202 | Duffy-antigen binding superfamily | Homologous Superfamily | |
IPR029211 | Plasmodium falciparum erythrocyte membrane protein 1, acidic terminal segment | Domain | |
IPR029210 | Plasmodium falciparum erythrocyte membrane protein-1, N-terminal segment | Domain | |
IPR041480 | Cysteine-rich interdomain region 1 gamma | Domain |
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | All alpha monotopic/peripheral | DBL (Duffy-binding like) | PfEMP1 (Plasmodium falciparum erythrocyte membrane protein) |