2V1C
Crystal structure and mutational study of RecOR provide insight into its role in DNA repair
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2v1ca1 | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
B | d2v1cb1 | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 ) [TaxId: 243230 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Nucleic acid-binding proteins | 8042766 | 3000135 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | ArfGap/RecO-like zinc finger | 8042768 | 3000151 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF21176 | e2v1cA5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21176 | ECOD (1.6) |
A | PF13662,PF21175 | e2v1cA6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: PF13662,PF21175 | ECOD (1.6) |
A | PF02132 | e2v1cA4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF02132 | ECOD (1.6) |
B | PF21176 | e2v1cB5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: PF21176 | ECOD (1.6) |
B | PF13662,PF21175 | e2v1cB6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: PF13662,PF21175 | ECOD (1.6) |
B | PF02132 | e2v1cB4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: PF02132 | ECOD (1.6) |
C | PF11967 | e2v1cC1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF11967 | ECOD (1.6) |
C | PF02565 | e2v1cC2 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF02565 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21176 | RecR, helix-hairpin-helix (RecR_HhH) | RecR, helix-hairpin-helix | - | Motif | |
PF21175 | RecR, C-terminal (RecR_C) | RecR, C-terminal | The bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consist ... | Domain | |
PF02132 | RecR, Cys4-zinc finger motif (RecR_ZnF) | RecR, Cys4-zinc finger motif | - | Motif | |
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family | |
PF11967 | Recombination protein O N terminal (RecO_N) | Recombination protein O N terminal | Recombination protein O (RecO) is involved in DNA repair and Pfam:PF00470 pathway recombination. This domain forms a beta barrel structure. | Domain | |
PF02565 | Recombination protein O C terminal (RecO_C) | Recombination protein O C terminal | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023627 | Recombination protein RecR | Homologous Superfamily | |
IPR006171 | TOPRIM domain | Domain | |
IPR015967 | Recombination protein RecR, conserved site | Conserved Site | |
IPR000093 | DNA recombination protein RecR | Family | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain | |
IPR034137 | RecR, TOPRIM domain | Domain | |
IPR022572 | DNA replication/recombination mediator RecO, N-terminal | Domain | |
IPR042242 | Recombination protein O, C-terminal | Homologous Superfamily | |
IPR037278 | ARFGAP/RecO-like zinc finger | Homologous Superfamily | |
IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily | |
IPR003717 | Recombination protein O, RecO | Family |