2PIG

Crystal structure of ydcK from Salmonella cholerae at 2.38 A resolution. Northeast Structural Genomics target SCR6

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2piga_ All beta proteins Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes YdcK-like automated matches (Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ], SCOPe (2.08)
Bd2pigb1 All beta proteins Single-stranded left-handed beta-helix Trimeric LpxA-like enzymes YdcK-like automated matches (Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ], SCOPe (2.08)
Bd2pigb2 Artifacts Tags Tags Tags C-terminal Tags (Salmonella enterica subsp. enterica serovar Paratyphi A ) [TaxId: 54388 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyTrimeric LpxA-like enzymes8040693 3001804 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyTrimeric LpxA-like enzymes8040693 3001804 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHexapep_2_1e2pigA1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)
BHexapep_2_1e2pigB1 A: beta duplicates or obligate multimersX: Single-stranded left-handed beta-helixH: Trimeric LpxA-like enzymes (From Topology)T: Trimeric LpxA-like enzymesF: Hexapep_2_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF18836YdcK Beta solenoid repeat (B_solenoid_ydck)YdcK Beta solenoid repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Putative transferase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR011004Trimeric LpxA-like superfamilyHomologous Superfamily
A, B
IPR048014YdcK-likeFamily
A, B
IPR040831YdcK Beta solenoid repeatRepeat