2P1R
Crystal structure of Salmonella typhimurium YegS, a putative lipid kinase homologous to eukaryotic sphingosine and diacylglycerol kinases.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | NAD kinase/diacylglycerol kinase-like | 8035320 | 3001940 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Diacylglycerol kinase-like | 8022940 | 4002740 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | NAD kinase/diacylglycerol kinase-like | 8035320 | 3001940 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | NAD kinase/diacylglycerol kinase-like | 8035320 | 3001940 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | NAD kinase/diacylglycerol kinase-like | 8035320 | 3001940 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | PF19279 | e2p1rC1 | A: beta sandwiches | X: NAD kinase beta sandwich domain-like (From Topology) | H: NAD kinase beta sandwich domain-like (From Topology) | T: NAD kinase beta sandwich domain-like | F: PF19279 | ECOD (1.6) |
C | PF00781 | e2p1rC2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00781 | ECOD (1.6) |
A | PF19279 | e2p1rA1 | A: beta sandwiches | X: NAD kinase beta sandwich domain-like (From Topology) | H: NAD kinase beta sandwich domain-like (From Topology) | T: NAD kinase beta sandwich domain-like | F: PF19279 | ECOD (1.6) |
A | PF00781 | e2p1rA2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00781 | ECOD (1.6) |
B | PF19279 | e2p1rB1 | A: beta sandwiches | X: NAD kinase beta sandwich domain-like (From Topology) | H: NAD kinase beta sandwich domain-like (From Topology) | T: NAD kinase beta sandwich domain-like | F: PF19279 | ECOD (1.6) |
B | PF00781 | e2p1rB2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00781 | ECOD (1.6) |
D | PF19279 | e2p1rD1 | A: beta sandwiches | X: NAD kinase beta sandwich domain-like (From Topology) | H: NAD kinase beta sandwich domain-like (From Topology) | T: NAD kinase beta sandwich domain-like | F: PF19279 | ECOD (1.6) |
D | PF00781 | e2p1rD2 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Phosphofructokinase N-terminal domain | F: PF00781 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 3.40.50.10330 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Probable inorganic polyphosphate/atp-NAD kinase | CATH (4.3.0) |
C | 2.60.200.40 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
A | 3.40.50.10330 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Probable inorganic polyphosphate/atp-NAD kinase | CATH (4.3.0) |
A | 2.60.200.40 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
B | 3.40.50.10330 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Probable inorganic polyphosphate/atp-NAD kinase | CATH (4.3.0) |
B | 2.60.200.40 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) | |
D | 3.40.50.10330 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Probable inorganic polyphosphate/atp-NAD kinase | CATH (4.3.0) |
D | 2.60.200.40 | Mainly Beta | Sandwich | Tumour Suppressor Smad4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF19279 | YegS C-terminal NAD kinase beta sandwich-like domain (YegS_C) | YegS C-terminal NAD kinase beta sandwich-like domain | This entry represents the C-terminal domain found in the YegS protein [1,2]. It is related to the beta sandwich domain of NAD kinases. The structure of YegS reveals a two-domain protein with the active site crevice found between the two domains. The ... | Domain | |
PF00781 | Diacylglycerol kinase catalytic domain (DAGK_cat) | Diacylglycerol kinase catalytic domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR045540 | YegS/DAGK, C-terminal domain | Domain | |
IPR022433 | Lipid kinase YegS | Family | |
IPR017438 | Inorganic polyphosphate/ATP-NAD kinase, N-terminal | Homologous Superfamily | |
IPR016064 | NAD kinase/diacylglycerol kinase-like domain superfamily | Homologous Superfamily | |
IPR005218 | Diacylglycerol/lipid kinase | Family | |
IPR001206 | Diacylglycerol kinase, catalytic domain | Domain |